Kavraki Lab
Physical and Biological Computing

This is a list of software belonging to the group.

1. OOPSMP: An Object-Oriented Programming System for Motion Planning

OOPSMP is a package for motion planning that is easy to extend, robust, and efficient. It can be used for motion planning research or as a teaching tool.

2. LabelHash: A Server for Matching Structural Protein Motifs

A web server for matching 3D structural motifs in proteins against the proteins in the Protein Data Bank. With a plugin for Chimera the match results can be visualized.

3. Reconstructing All-Atom Protein Structures

Coming soon! A web server for reconstructing all atom protein structures from coarse grain structures.

4. Educational Material

This is not strictly speaking software, but we have also developed some educational material on structural computational biology and bioinformatics. See a short course module Geometric Methods in Structural Computational Biology which can be used under the license information specified in the same page.