Biblio

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Agrawal PK, Kavraki LE, Mason M.  1998.  Robotics: The Algorithmic Perspective.
Abstract           Publisher's web site     
Agrawal PK, Guibas LJ, Edelsbrunner H, Erickson J, Isard M, Har-Peled S, Hershberger J, Jensen C, Kavraki LE, Koehl P et al..  2002.  Algorithmic Issues in Modeling Motion. ACM Computing Surveys. 34:550-572.
Abstract           Publisher's web site     
Akinc M, Bekris KE, Chen BY, Ladd AM, Plaku E, Kavraki LE.  2005.  Probabilistic Roadmaps of Trees for Parallel Computation of Multiple Query Roadmaps. Robotic Research: The Eleventh International Symposium. :80-89.
Abstract      Preprint PDF     Publisher's web site     
Anshelevich E, Owens S, Lamiraux F, Kavraki LE.  2000.  Deformable Volumes in Path Planning Applications. Proceedings of The IEEE International Conference on Robotics and Automation (ICRA). 3:2290-2295.
Abstract      Preprint PDF     Publisher's web site     
Argyros AA, Bekris KE, Orphanoudakis SC.  2001.  Robot Homing based on Corner Tracking in a Sequence of Panoramic Images. Computer Vision and Pattern Recognition Conference (CVPR 2001).
Abstract      Preprint PDF     Publisher's web site     
Argyros AA, Bekris KE, Orphanoudakis SC, Kavraki LE.  2005.  Robot Homing by Exploiting Panoramic Vision. Autonomous Robots. 19:7-25.
Abstract      Preprint PDF     Publisher's web site     
Arnavut Z, Plaku E.  1999.  Lossless Compression of ECG Signals. IEEE International Conference of the Engineering in Medicine and Biology Society (BMES/EMBS). 1
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B
Balázsi G, Heath AP, Shi L, Gennaro ML.  2008.  The temporal response of the Mycobacterium tuberculosis gene regulatory network during growth arrest. Molecular Systems Biology. 4
Abstract           Publisher's web site     
Barraquand B, Kavraki LE, Latombe J-C, Li T-Y, Motwani R, Raghavan P.  1996.  A Random Sampling Scheme for Robot Path Planning. Robotics Research. :249-264.
Preprint PDF
Barraquand B, Kavraki LE, Latombe J-C, Li T-Y, Motwani R, Raghavan P.  1997.  A Random Sampling Scheme for Robot Path Planning. International Journal of Robotics Research. 16:759-774.
Preprint PDF     Publisher's web site     
van den Bedem H, Dhanik A, Latombe JC, Deacon AM.  2009.  Modeling Discrete Heterogeneity in X-Ray Diffraction Data by Fitting Multi-conformers. Acta Crystallographica D. 65:1107-1117.
Bekris KE, Hatzopoulos K, Kazazakis G, Kontolemakis G, Masvoula M, Tsivourakis N, Argyros AA, Trahanias P.  2001.  PYTHEAS: An Integrated Robotic System with Autonomous Navigation Capabilities. KTISIVIOS - Pan Hellenic Conference in Robotics and Automation. :81-92.
Abstract      Preprint PDF
Bekris KE, Kavraki LE.  2007.  Greedy but Safe Replanning under Kinodynamic Constraints. Intl. Conf. on Robotics and Automation. :704-710.
Abstract      Preprint PDF     Publisher's web site     
Bekris KE, Grady DK, Moll M, Kavraki LE.  2012.  Safe Distributed Motion Coordination for Second-Order Systems With Different Planning Cycles. International Journal of Robotics Research. 31:129-150.
Abstract      Preprint PDF     Publisher's web site     
Bekris KE, Chen BY, Ladd AM, Plaku E, Kavraki LE.  2003.  Multiple Query Probabilistic Roadmap Planning Using Single Query Planning Primitives. 2003 IEEE/RJS International Conference on Intelligent Robots and Systems (IROS). :656-661.
Abstract      Preprint PDF     Publisher's web site     
Bekris KE, Glick M, Kavraki LE.  2006.  Evaluation of Algorithms for Bearing-Only SLAM. Proceedings of The IEEE International Conference on Robotics and Automation (ICRA). :1937-1944.
Abstract      Preprint PDF     Publisher's web site     
Bekris KE, Argyros AA, Kavraki LE.  2006.  Exploiting Panoramic Vision for Angle-Based Robot Navigation. Lecture Notes in Computer Science, Vol. 33. :229-251.
Abstract      Preprint PDF
Bekris KE, Tsianos K, Kavraki LE.  2007.  A Distributed Protocol for Safe Real-Time Planning of Communicating Vehicles with Second-Order Dynamics. First International Conference on Robot Communication and Coordination (ROBOCOMM 07).
Abstract      Preprint PDF
Bekris KE, Tsianos K, Kavraki LE.  2009.  Safe and Distributed Kinodynamic Replanning for Vehicular networks. ACM/Springer Mobile Networks and Applications (MONET). 14:292–308.
Abstract      Preprint PDF     Publisher's web site     
Bekris KE, Hatzopoulos K, Kazazakis G, Kontolemakis G, Masvoula M, Tsivourakis N, Argyros AA, Trahanias P.  2002.  PYTHEAS: An Integrated Robotic System with Autonomous Navigation Capabilities. Journal of Image Processing & Communications. 8:81-92.
Abstract      Preprint PDF
Bekris KE, Tsianos K, Kavraki LE.  2007.  A Decentralized Planner that Guarantees the Safety of Communicating Vehicles with Complex Dynamics that Replan Online. IEEE/RSJ Intl. Conf. on Intelligent Robots and Systems.
Abstract      Preprint PDF
Bekris KE, Argyros AA, Kavraki LE.  2004.  Angle-Based Methods for Mobile Robot Navigation: Reaching the Entire Plane. Proceedings of The IEEE International Conference on Robotics and Automation (ICRA). :2373--2378.
Abstract      Preprint PDF     Publisher's web site     
Bekris KE.  2008.  Informed Planning and Safe Distributed Replanning under Physical Constraints. Department of Computer Science.
Abstract      Preprint PDF
Bhatia A, Kavraki LE, Vardi MY.  2010.  Motion Planning with Hybrid Dynamics and Temporal Goals. IEEE Conference on Decision and Control. :1108-1115.
Abstract      Preprint PDF
Bhatia A, Maly MR, Kavraki LE, Vardi MY.  2011.  Motion Planning with Complex Goals. Robotics Automation Magazine, IEEE. 18:55-64.
Abstract      Preprint PDF     Publisher's web site     
Bhatia A, Kavraki LE, Vardi MY.  2010.  Sampling-Based Motion Planning with Temporal Goals. IEEE International Conference on Robotics and Automation. :2689-2696.
Abstract      Preprint PDF
Bohlin R, Kavraki LE.  2000.  Path Planning Using Lazy PRM. Proceedings of the IEEE International Conference on Robotics and Automation. 1:521-528.
Abstract      Preprint PDF     Publisher's web site     
Bohlin R, Kavraki LE.  2001.  A Randomized Algorithm for Robot Path Planning Based on Lazy Evaluation. Handbook on Randomized Computing. :221-249.
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Bohringer K-F, Donald BR, Kavraki LE, Lamiraux F.  1999.  A Single Universal Force Field can Uniquely Orient Non-Symmetric Parts. Robotics Research: The 9th International Symposium. :395-402.
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Bohringer K-F, Donald BR, Kavraki LE, Lamiraux F.  2000.  A Distributed, Universal Device for Planar Parts Feeding: Unique Part Orientation in Programmable Vector Fields. Distributed Manipulation. :1-29.
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Bohringer K-F, Donald BR, Kavraki LE, Lamiraux F.  2000.  Part Orientation to One and Two Stable Equilibria Using Programmable Vector Fields. IEEE Transactions on Robotics and Automation. 16:157-170.
Preprint PDF
Brock O, Kavraki LE.  2001.  Decomposition-Based Motion Planning: A Framework for Real-Time Motion Planning in High-Dimensional Configuration Places. Proceedings of The 2001 IEEE International Conference on Robotics and Automation (ICRA). :1469-1475.
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Brock O, Kavraki LE.  2000.  Towards Real-Time Motion Planning in High Dimensional Spaces. Proceedings of The International Symposium on Robotics and Automation (ISRA).
Bryant DH, Moll M, Chen BY, Fofanov VY, Kavraki LE.  2010.  Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction. BMC Bioinformatics. 11:242.
Abstract      Preprint PDF     Publisher's web site     
Buban JP, Ramasse Q, Gipson B, Browning ND, Stahlberg H.  2009.  High-resolution low-dose scanning transmission electron microscopy. Journal of Electron Microscopy. 10:1–10.
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C
Chen BY, Fofanov VY, Kristensen DM, Kimmel M, Lichtarge O, Kavraki LE.  2005.  Algorithms for Structural Comparison and Statistical Analysis of 3D Protein Motifs. Pacific Symposium on Biocomputing.
Chen BY, Bryant DH, Cruess AE, Bylund JH, Fofanov VY, Kimmel M, Lichtarge O, Kavraki LE.  2007.  Composite Motifs Integrating Multiple Protein Structures Increase Sensitivity for Function Prediction. Computational Systems Bioinformatics Conference (CSB2007). :343-355.
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Chen BY, Bryant DH, Fofanov VY, Kristensen DM, Cruess AE, Kimmel M, Lichtarge O, Kavraki LE.  2006.  Cavity-Aware Motifs Reduce False Positives in Protein Function Prediction. Systems Bioinformatics Conference (CSB). 4:311-323.
Abstract           Publisher's web site     
Chen BY, Bryant DH, Fofanov VY, Kristensen DM, Cruess AE, Kimmel M, Lichtarge O, Kavraki LE.  2007.  Cavity Scaling: Automated Refinement of Cavity-Aware Motifs in Protein Function Prediction. Journal of Bioinformatics and Computational Biology. 5:353-382.
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Chen BY, Fofanov VY, Bryant DH, Dodson BD, Kristensen DM, Lisewski AM, Kimmel M, Lichtarge O, Kavraki LE.  2006.  Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function Prediction. Research in Computational Biology: 10th Annual International Conference (RECOMB).
Abstract           Publisher's web site     
Chen BY, Fofanov VY, Bryant DH, Dodson BD, Kristensen DM, Lisewski AM, Kimmel M, Lichtarge O, Kavraki LE.  2007.  The MASH Pipeline for Protein Function Prediction and an Algorithm for the Geometric Refinement of 3D Motifs. Journal of Computational Biology. 14:791-816.
Abstract      Preprint PDF     Publisher's web site     
Chiu PL, Pagel MD, Evans J, Chou HT, Zeng X, Gipson B, Stahlberg H, Nimigean CM.  2007.  The Structure of the Prokaryotic Cyclic Nucleotide-Modulated Potassium Channel MloK1 at 16 A Resolution. Structure. 15:1053–1064.
     Publisher's web site     
Choset H, Burgard W, Hutchinson S, Kantor G, Kavraki LE, Lynch K, Thrun S.  2005.  Principles of Robot Motion: Theory, Algorithms, and Implementation.
Abstract           Publisher's web site     
Ciocarlie M, Hsiao K, Jones GE, Chitta S, Rusu RB, Sucan IA.  2010.  Towards Reliable Grasping and Manipulation in Household Environments. International Symposium on Experimental Robotics.
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Danner T, Kavraki LE.  2000.  Randomized Planning for Short Inspection Paths. Proceedings of The IEEE International Conference on Robotics and Automation (ICRA). 2:971-976.
Abstract      Preprint PDF     Publisher's web site     
Das P, Moll M, Stamati H, Kavraki LE, Clementi C.  2006.  Low-dimensional Free-energy Landscapes of Protein-Folding Reactions by Nonlinear Dimensionality Reduction. Proceedings of the National Academy of Sciences. 103:9885-9890.
Abstract      Preprint PDF     Publisher's web site     
Dhanik A, McMurray JS, Kavraki LE.  2012.  Binding Modes of Peptidomimetics Designed to Inhibit STAT3. PLoS ONE. 7(12):e51603.
Abstract      Preprint PDF     Publisher's web site     
Dhanik A.  2010.  Computational Modeling of Structural Heterogeneity in Folded Proteins. PhD Thesis
Dhanik A, McMurray JS, Kavraki LE.  2011.  On modeling peptidomimetics in complex with the SH2 domain of Stat3. 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC ’11). :3329-3332.
Abstract      Preprint PDF     Publisher's web site     
Dhanik A, Yao P, Marz N, Propper R, Kou C, Liu G, van den Bedem H, Latombe JC.  2007.  Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops. 7th Workshop on Algorithms in Bioinformatics (WABI’07). :265-276.