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Zhang M, Kavraki LE.  2002.  A New Method for Fast and Accurate Derivation of Molecular Conformations. Journal of Chemical Information and Computer Sciences. 42:64-70.
Abstract      Preprint PDF     Publisher's web site     
Plaku E, Kavraki LE.  2007.  Nonlinear Dimensionality Reduction Using Approximate Nearest Neighbors. SIAM International Conference on Data Mining (SDM). :3711-3716.
Abstract      Preprint PDF     Publisher's web site     
Ricklin D, Ricklin-Lichtsteiner SK, Sfyroera G, Chen H, Tzekou A, Magotti P, Wu Y-Q, Garcia BL, McWorther WJ, Haspel N et al..  2008.  Novel insights into target specificities and molecular mechanisms for two potent complement evasion proteins from Staphylococcus aureus.. XXII International Complement Workshop.
Abstract           Publisher's web site