Biblio

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Moll M, Miikkulainen R, Abbey J.  1994.  The Capacity of Convergence-Zone Episodic Memory. Proc. 12th Natl. Conf. on Artificial Intelligence. :68--73.
Abstract      Preprint PDF     Publisher's web site     
Hsu D, Kavraki LE, Latombe J-C, Motwani R, Rolim J.  1999.  Capturing the Connectivity of High-Dimensional Geometric Spaces by Parallelizable Random Sampling Techniques. Parallel and Distributed Processing. 1388:330-340.
Preprint PDF
Chen BY, Bryant DH, Fofanov VY, Kristensen DM, Cruess AE, Kimmel M, Lichtarge O, Kavraki LE.  2007.  Cavity Scaling: Automated Refinement of Cavity-Aware Motifs in Protein Function Prediction. Journal of Bioinformatics and Computational Biology. 5:353-382.
Abstract      Preprint PDF
Chen BY, Bryant DH, Fofanov VY, Kristensen DM, Cruess AE, Kimmel M, Lichtarge O, Kavraki LE.  2006.  Cavity-Aware Motifs Reduce False Positives in Protein Function Prediction. Systems Bioinformatics Conference (CSB). 4:311-323.
Abstract           Publisher's web site     
Sucan IA, Kalakrishnan M, Chitta S.  2010.  Combining Planning Techniques for Manipulation Using Realtime Perception. IEEE International Conference on Robotics and Automation. :2895-2901.
Preprint PDF     Publisher's web site     
Chen BY, Bryant DH, Cruess AE, Bylund JH, Fofanov VY, Kimmel M, Lichtarge O, Kavraki LE.  2007.  Composite Motifs Integrating Multiple Protein Structures Increase Sensitivity for Function Prediction. Computational Systems Bioinformatics Conference (CSB2007). :343-355.
Abstract      Preprint PDF
Kavraki LE.  1995.  Computation of Configuration Space Obstacles Using the Fast Fourier Transform. IEEE Transactions on Robotics and Automation. 11:408-413.
Abstract      Preprint PDF     Publisher's web site     
Kavraki LE.  1993.  Computation of configuration-space obstacles using the fast Fourier transform. IEEE International Conference on Robotics and Automation. 3:255-261.
Abstract           Publisher's web site     
Finn PW, Kavraki LE.  1999.  Computational Approaches to Drug Design. Algorithmica. 25:347-371.
Preprint PDF
Heath AP, Kavraki LE.  2009.  Computational Challenges in Systems Biology. Computer Science Review. 3:1-17.
Abstract      Preprint PDF     Publisher's web site     
Dhanik A.  2010.  Computational Modeling of Structural Heterogeneity in Folded Proteins. PhD Thesis
Gipson B, Hsu D, Kavraki LE, Latombe J-C.  2012.  Computational Models of Proteins Kinematics and Dynamics: Beyond Simulation. Annual Reviews of Analytical Chemistry. 5:273-291.
Abstract      Preprint PDF     Publisher's web site     
Teodoro ML, Kavraki LE.  2003.  Conformational Flexibility Models for the Receptor in Structure Based Drug Design. Current Pharmaceutical Design. 9:1419-1431.
Abstract      Preprint PDF     Publisher's web site     
Moll M, Miikkulainen R.  1997.  Convergence-Zone Episodic Memory: Analysis and Simulations. Neural Networks. 10:1017--1036.
Abstract      Preprint PDF     Publisher's web site     
Yin J, Dhanik A, Hsu D, Wang Y.  2004.  The Creation of a Music-driven Digital Violinist. ACM international conference on Multimedia. :476-479.