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2012
Bekris, KE, Grady DK, Moll M, Kavraki LE.  2012.  Safe Distributed Motion Coordination for Second-Order Systems With Different Planning Cycles. International Journal of Robotics Research. 31:129-149.
Abstract      Preprint PDF
2011
Bhatia, A, Maly MR, Kavraki LE, Vardi MY.  2011.  Motion Planning with Complex Goals. Robotics Automation Magazine, IEEE. 18:55-64.
Abstract      Preprint PDF     Publisher's web site     
Grady, DK, Moll M, Hegde C, Sankaranarayanan AC, Baraniuk RG, Kavraki LE.  2011.  Look Before You Leap: Predictive Sensing and Opportunistic Navigation. Workshop on Progress and Open Problems in Motion Planning at the IEEE/RSJ Conf. on Intelligent Robots and Systems.
Abstract      Preprint PDF
Moll, M, Bryant DH, Kavraki LE.  2011.  The LabelHash Server and Tools for Substructure-Based Functional Annotation. Bioinformatics. 27:2161--2162.
Abstract      Preprint PDF     Publisher's web site     
Dhanik, A, McMurray JS, Kavraki LE.  2011.  On modeling peptidomimetics in complex with the SH2 domain of Stat3. 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC ’11). :3329-3332.
Abstract      Preprint PDF
Heath, AP, Bennett GN, Kavraki LE.  2011.  An Algorithm for Efficient Identification of Branched Metabolic Pathways. Journal of Computational Biology. [Epub ahead of print]
Abstract           Publisher's web site     
Grady, DK, Bekris KE, Kavraki LE.  2011.  Asynchronous Distributed Motion Planning with Safety Guarantees under Second-Order Dynamics. Algorithmic Foundations of Robotics IX. 68:53-70.
Abstract      Preprint PDF     Publisher's web site     
Heath, AP, Bennett GN, Kavraki LE.  2011.  Identifying Branched Metabolic Pathways by Merging Linear Metabolic Pathways. 15th Annual International Conference on Research in Computational Molecular Biology (RECOMB). 6577/2011:70-84.
Abstract           Publisher's web site     
Sucan, IA, Kavraki LE.  2011.  Mobile Manipulation: Encoding Motion Planning Options Using Task Motion Multigraphs. IEEE International Conference on Robotics and Automation. :5492--5498.
Preprint PDF     Publisher's web site     
Sucan, IA, Kavraki LE.  2011.  On the Advantages of Using Task Motion Multigraphs for Efficient Mobile Manipulation. IEEE/RSJ International Conference on Intelligent Robots and Systems. :4621-4626.
Preprint PDF     Publisher's web site     
Sucan, IA, Kavraki LE.  2011.  A Sampling-Based Tree Planner for Systems With Complex Dynamics.
Abstract      Preprint PDF     Publisher's web site     
Moll, M, Sucan IA, Bordeaux J, Kavraki LE.  2011.  Teaching Motion Planning Concepts to Undergraduate Students. IEEE Workshop on Advanced Robotics and its Social Impacts.
Abstract      Preprint PDF
Grady, DK.  2011.  Unsynchronized Distributed Motion Planning with Safety Guarantees under Second-Order Dynamics.
Abstract      Preprint PDF
2010
Bhatia, A, Kavraki LE, Vardi MY.  2010.  Sampling-Based Motion Planning with Temporal Goals. IEEE International Conference on Robotics and Automation. :2689-2696.
Abstract      Preprint PDF
Stamati, H, Clementi C, Kavraki LE.  2010.  Application of nonlinear dimensionality reduction to characterize the conformational landscape of small peptides. Proteins. 78:223-235.
Abstract           Publisher's web site     
Moll, M, Bryant DH, Kavraki LE.  2010.  The LabelHash Algorithm for Substructure Matching. BMC Bioinformatics. 11(1):555.
Abstract      Preprint PDF     Publisher's web site     
Plaku, E, Kavraki LE, Vardi MY.  2010.  Motion Planning with Dynamics by a Synergistic Combination of Layers of Planning. IEEE Transactions on Robotics. 26:469-482.
Abstract      Preprint PDF     Publisher's web site     
Bryant, DH, Moll M, Chen BY, Fofanov VY, Kavraki LE.  2010.  Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction. BMC Bioinformatics. 11:242.
Abstract      Preprint PDF     Publisher's web site     
Heath, AP, Bennett GN, Kavraki LE.  2010.  Finding Metabolic Pathways Using Atom Tracking. Bioinformatics. 26:1548-1555.
Abstract           Publisher's web site     
Bhatia, A, Kavraki LE, Vardi MY.  2010.  Motion Planning with Hybrid Dynamics and Temporal Goals. IEEE Conference on Decision and Control. :1108-1115.
Abstract      Preprint PDF
Sucan, IA, Kavraki LE.  2010.  On the Implementation of Single-Query Sampling-Based Motion Planners. IEEE International Conference on Robotics and Automation. :2005-2011.
Preprint PDF     Publisher's web site     
Moll, M, Bordeaux J, Kavraki LE.  2010.  Teaching Robot Motion Planning. Computers in Education (Special Issue on Novel Approaches to Robotics Education). 20:50–59.
Abstract      Preprint PDF
Haspel, N, Moll M, Baker ML, Chiu W, Kavraki LE.  2010.  Tracing conformational changes in proteins. BMC Structural Biology. 10:S1.
Abstract      Preprint PDF     Publisher's web site     
2009
Sucan, IA, Kavraki LE.  2009.  On the Performance of Random Linear Projections for Sampling-Based Motion Planning. IEEE/RSJ International Conference on Intelligent Robots and Systems. :2434-2439.
Preprint PDF     Publisher's web site     
Rusu, RB, Sucan IA, Gerkey BP, Chitta S, Beetz M, Kavraki LE.  2009.  Real-Time Perception-Guided Motion Planning for a Personal Robot. IEEE/RSJ International Conference on Intelligent Robots and Systems. :4245-4252.
Preprint PDF     Publisher's web site     
Heath, AP, Kavraki LE.  2009.  Computational Challenges in Systems Biology. Computer Science Review. 3:1-17.
Abstract      Preprint PDF     Publisher's web site     
Plaku, E, Kavraki LE, Vardi MY.  2009.  Falsification of LTL Safety Properties in Hybrid Systems. Proc. of the Conf. on Tools and Algorithms for the Construction and Analysis of Systems (TACAS 2009).
Abstract      Preprint PDF
Plaku, E, Kavraki LE, Vardi MY.  2009.  Hybrid systems: from verification to falsification by combining motion planning and discrete search. Formal Methods in System Design. 34:157-182.
Abstract      Preprint PDF     Publisher's web site     
Sucan, IA, Kavraki LE.  2009.  Kinodynamic Motion Planning by Interior-Exterior Cell Exploration. Algorithmic Foundation of Robotics VIII (Proceedings of Workshop on the Algorithmic Foundations of Robotics). 57:449-464.
Abstract      Preprint PDF     Publisher's web site     
Haspel, N, Geisbrecht B, Lambris JD, Kavraki LE.  2009.  Multi-scale Characterization of the Energy Landscape of Proteins with Application to the C3d/Efb-C Complex. Proteins: Structure, function and bioinformatics. 78:1004-1014.
     Publisher's web site     
Bekris, KE, Tsianos K, Kavraki LE.  2009.  Safe and Distributed Kinodynamic Replanning for Vehicular networks. ACM/Springer Mobile Networks and Applications (MONET). 14:292–308.
Abstract      Preprint PDF     Publisher's web site     
Haspel, N, Moll M, Baker ML, Chiu W, Kavraki LE.  2009.  Tracing Conformational Changes in Proteins. IEEE Intl. Conf. on Bioinformatics and Biomedicine Workshops (BIBMW).
Abstract      Preprint PDF     Publisher's web site     
2008
Plaku, E, Kavraki LE, Vardi MY.  2008.  Impact of Workspace Decompositions on Discrete Search Leading Continuous Exploration (DSLX) Motion Planning. IEEE International Conference on Robotics and Automation. :3751-3756.
Abstract     
Plaku, E, Kavraki LE, Vardi MY.  2008.  Discrete Search Leading Continuous Exploration for Kinodynamic Motion Planning. Robotics: Science and Systems. :326-333.
Abstract      Preprint PDF     Publisher's web site     
Heath, AP, Balázsi G, Kavraki LE.  2008.  Bipolarity of the saccharomyces cerevisiae genome. International Conference on Bioinformatics and Biomedical Engineering (iCBBE). :330–333.
Abstract           Publisher's web site     
Plaku, E.  2008.  From High-Level Tasks to Low-Level Motions: Motion Planning for High-Dimensional Nonlinear Hybrid Robotic Systems. Department of Computer Science.
Abstract      Preprint PDF
Bekris, KE.  2008.  Informed Planning and Safe Distributed Replanning under Physical Constraints. Department of Computer Science.
Abstract      Preprint PDF
Moll, M, Kavraki LE.  2008.  LabelHash: A Flexible and Extensible Method for Matching Structural Motifs. Automated Function Prediction / BioSapiens meeting (AFP-BioSapiens).
Preprint PDF     Publisher's web site     
Moll, M, Kavraki LE.  2008.  Matching of Structural Motifs Using Hashing on Residue Labels and Geometric Filtering for Protein Function Prediction. The Seventh Annual International Conference on Computational Systems Bioinformatics (CSB2008). :157-168.
Abstract      Preprint PDF     Publisher's web site     
Shehu, A.  2008.  Molecules in Motion: Computing Structural Flexibility. Department of Computer Science.
Abstract      Preprint PDF
Kristensen, DM, Ward MR, Lisewski AM, Edrin S, Chen BY, Fofanov VY, Kimmel M, Lichtarge O.  2008.  Prediction of enzyme function based on 3D templates of evolutionarily important amino acids. BMC Bioinformatics. 9(17)
Abstract           Publisher's web site     
Tsianos, K.  2008.  Replanning: A Powerful Planning Strategy for Systems with Differential Constraints. Department of Computer Science.
Abstract      Preprint PDF
Fofanov, VY, Chen BY, Bryant DH, Moll M, Lichtarge O, Kavraki LE, Kimmel M.  2008.  A Statistical Model to Correct Systematic Bias Introduced by Algorithmic Thresholds in Protein Structural Comparison Algorithms. IEEE Intl. Conf. on Bioinformatics and Biomedicine (BIBM).
Abstract      Preprint PDF     Publisher's web site     
2007
Stamati, H.  2007.  Analysis of Molecular Motion using Non-Linear Dimensionality Reduction. Department of Computer Science.
Abstract      Preprint PDF
Plaku, E, Kavraki LE, Vardi MY.  2007.  Hybrid Systems: From Verification to Falsification. International Conference on Computer Aided Verification (CAV). 4590:468--481.
Abstract      Preprint PDF     Publisher's web site     
Plaku, E, Kavraki LE, Vardi MY.  2007.  A Motion Planner for a Hybrid Robotic System with Kinodynamic Constraints. IEEE International Conference on Robotics and Automation (ICRA). :692--697.
Abstract      Preprint PDF     Publisher's web site     
Kavraki, LE, LaValle SM.  2007.  Motion Planning. Handbook of Robotics.
     Publisher's web site     
Plaku, E, Kavraki LE.  2007.  Nonlinear Dimensionality Reduction Using Approximate Nearest Neighbors. SIAM International Conference on Data Mining (SDM). :3711-3716.
Abstract      Preprint PDF     Publisher's web site     
2006
Chen, BY, Fofanov VY, Bryant DH, Dodson BD, Kristensen DM, Lisewski AM, Kimmel M, Lichtarge O, Kavraki LE.  2006.  Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function Prediction. Research in Computational Biology: 10th Annual International Conference (RECOMB).
Abstract           Publisher's web site     
2005
Zhang, M, White RA, Wang L, Goldman R, Kavraki LE, Hassett B.  2005.  Improving Conformational Searches by Geometric Screening. Bioinformatics. 21:624-630.
Abstract      Preprint PDF     Publisher's web site