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2007
Fast and Reliable Analysis of Molecular Motion Using Proximity Relations and Dimensionality Reduction, Plaku E, Stamati H, Clementi C, Kavraki LE , Proteins: Structure, Function, and Bioinformatics, Volume 67, Number 4, p.897--907, (2007)

2006
Low-dimensional Free-energy Landscapes of Protein-Folding Reactions by Nonlinear Dimensionality Reduction, Das P, Moll M, Stamati H, Kavraki LE, Clementi C , Proceedings of the National Academy of Sciences, June 17, Volume 103, Number 26, p.9885-9890, (2006)