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2008
Impact of Workspace Decompositions on Discrete Search Leading Continuous Exploration (DSLX) Motion Planning, Plaku E, Kavraki LE, Vardi MY , IEEE International Conference on Robotics and Automation, Pasadena, CA, (2008)

Matching of Structural Motifs Using Hashing on Residue Labels and Geometric Filtering for Protein Function Prediction, Moll M, Kavraki LE , The Seventh Annual International Conference on Computational Systems Bioinformatics (CSB2008), (2008)

Robot Algorithms, Tsianos K, Halperin D, Kavraki L, Latombe J, Attalah M , Algorithms and Theory of Computation Handbook, (2008)

Unfolding the Fold of Cyclic Cysteine-rich Peptides, Shehu A, Kavraki LE, Clementi C , Protein Science, Volume 17, Issue 3, p.482-493, (2008)

2007
A Distributed Protocol for Safe Real-Time Planning of Communicating Vehicles with Second-Order Dynamics, Bekris KE, Tsianos KI, Kavraki LE , First International Conference on Robot Communication and Coordination (ROBOCOMM 07), Oct. 15-17, Athens, Greece, (2007)

A Decentralized Planner that Guarantees the Safety of Communicating Vehicles with Complex Dynamics that Replan Online, Bekris KE, Tsianos KI, Kavraki LE , IEEE/RSJ Intl. Conf. on Intelligent Robots and Systems, 29 Oct./2 Nov., San Diego, CA, (2007)

A Motion Planner for a Hybrid Robotic System with Kinodynamic Constraints, Plaku E, Kavraki LE, Vardi MY , IEEE International Conference on Robotics and Automation (ICRA), Rome, Italy, p.692--697, (2007)

Cavity Scaling: Automated Refinement of Cavity-Aware Motifs in Protein Function Prediction, Chen BY, Bryant DH, Fofanov VY, Kristensen DM, Cruess AE, Kimmel M, Lichtarge O, Kavraki LE , Journal of Bioinformatics and Computational Biology, Volume 5, Number 2a, p.353-382, (2007)

Composite Motifs Integrating Multiple Protein Structures Increase Sensitivity for Function Prediction, Chen BY, Bryant DH, Cruess AE, Bylund JH, Fofanov VY, Kimmel M, Lichtarge O, Kavraki LE , Computational Systems Bioinformatics Conference (CSB2007), p.343-355, (2007)

Distributed Computation of the knn Graph for Large High-Dimensional Point Sets, Plaku E, Kavraki LE , Journal of Parallel and Distributed Computing, Volume 67, Number 3, p.346--359, (2007)

Discrete Search Leading Continuous Exploration for Kinodynamic Motion Planning, Plaku E, Kavraki LE, Vardi MY , Robotics: Science and Systems, Atlanta, Georgia, (2007)

Fast and Reliable Analysis of Molecular Motion Using Proximity Relations and Dimensionality Reduction, Plaku E, Stamati H, Clementi C, Kavraki LE , Proteins: Structure, Function, and Bioinformatics, Volume 67, Number 4, p.897--907, (2007)

From coarse-grain to all-atom: Toward multiscale analysis of protein landscapes, Heath AP, Kavraki LE, Clementi C , Proteins: Structure, Function and Bioinformatics, Aug, Volume 68, Number 3, p.646-661, (2007)

Greedy but Safe Replanning under Kinodynamic Constraints, Bekris KE, Kavraki LE , Intl. Conf. on Robotics and Automation, April, Rome, Italy, p.704-710, (2007)

Hybrid Systems: From Verification to Falsification, Plaku E, Kavraki LE, Vardi MY, and Hermanns DWH , International Conference on Computer Aided Verification (CAV), Volume 4590, Berlin, Germany, p.468--481, (2007)

Motion Planning, Kavraki LE, LaValle S, and Siciliano KOB , Advanced Series in Robotics, p.In Press, (2007)

Nonlinear Dimensionality Reduction Using Approximate Nearest Neighbors, Plaku E, Kavraki LE , SIAM International Conference on Data Mining (SDM), Minneapolis, Minnesota, p.3711-3716, (2007)

On the Characterization of Protein Native State Ensembles, Shehu A, Kavraki LE, Clementi C , Biophysical Journal, Volume 92, Number 5, p.1503-1511, (2007)

OOPS for Motion Planning: An Online Open-source Programming System, Plaku E, Bekris KE, Kavraki LE , IEEE International Conference on Robotics and Automation (ICRA), Rome, Italy, p.3711-3716, (2007)

Protein-Ligand Interactions: Computational Docking, Schwarz D, Kavraki LE , Encyclopedia of Life Sciences, p.Article #A4105, (2007)

Roadmap Methods for Protein Folding, Moll M, Schwarz D, Kavraki LE, and Bystroff ZMC , Protein Structure Prediction: Methods and Protocols, Oct., (2007)

Sampling Conformation Space to Model Equilibrium Fluctuations in Proteins, Shehu A, Clementi C, Kavraki LE , Algorithmica, Volume 48, Issue 4, p.303-327, (2007)

Sampling-based robot motion planning: Towards realistic applications, Tsianos KI, Sucan IA, Kavraki LE , Computer Science Review, August, Volume 1, Issue 1, p.2--11, (2007)

The MASH Pipeline for Protein Function Prediction and an Algorithm for the Geometric Refinement of 3D Motifs, Chen BY, Fofanov VY, Bryant DH, Dodson BD, Kristensen DM, Lisewski AM, Kimmel M, Lichtarge O, Kavraki LE , Journal of Computational Biology, Volume 14, Number 6, p.791-816, (2007)

2006
Cavity-Aware Motifs Reduce False Positives in Protein Function Prediction, Chen BY, Bryant DH, Fofanov VY, Kristensen DM, Cruess AE, Kimmel M, Lichtarge O, Kavraki LE , Systems Bioinformatics Conference (CSB), August, Volume 4, Stanford, CA, p.311-323, (2006)

Evaluation of Algorithms for Bearing-Only SLAM, Bekris KE, Glick M, Kavraki LE , Proceedings of The IEEE International Conference on Robotics and Automation (ICRA), May, Orlando, FL, p.1937-1944, (2006)

Exploiting Panoramic Vision for Angle-Based Robot Navigation, Bekris KE, Argyros AA, Kavraki LE, and Kleete DKR , Lecture Notes in Computer Science, Vol. 33, p.229-251, (2006)

Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function Prediction, Chen BY, Fofanov VY, Bryant DH, Dodson BD, Kristensen DM, Lisewski AM, Kimmel M, Lichtarge O, Kavraki LE , Research in Computational Biology: 10th Annual International Conference (RECOMB), April, Venice, Italy, (2006)

Low-dimensional Free-energy Landscapes of Protein-Folding Reactions by Nonlinear Dimensionality Reduction, Das P, Moll M, Stamati H, Kavraki LE, Clementi C , Proceedings of the National Academy of Sciences, June 17, Volume 103, Number 26, p.9885-9890, (2006)

Modeling Protein Conformational Ensembles: From Missing Loops to Equilibrium Fluctuations, Shehu A, Clementi C, Kavraki LE , Proteins: Structure, Function and Bioinformatics, Volume 65, Number 1, p.164-179, (2006)

Path Planning for Deformable Linear Objects, Moll M, Kavraki LE , IEEE Transactions on Robotics, Aug., Volume 22, Number 4, p.625-636, (2006)

Quantitative Analysis of Nearest Neighbors Search in High-Dimensional Sampling-based Motion Planning, Plaku E, Kavraki LE , Workshop on Algorithmic Foundations of Robotics (WAFR), New York, NY, (2006)

Recurrent Use of Evolutionary Importance for Functional Annotation of Proteins Based on Local Structural Similarity, Kristensen DM, Chen BY, Fofanov VY, Ward RM, Lisewski AM, Kimmel M, Kavraki LE, Lichtarge O , Protein Science, Volume 15, Number 6, p.1530-1536, (2006)

2005
Algorithms for Structural Comparison and Statistical Analysis of 3D Protein Motifs, Chen BY, Fofanov VY, Kristensen DM, Kimmel M, Lichtarge O, Kavraki LE , Pacific Symposium on Biocomputing, Hawaii, USA, (2005)

Distributed Sampling-Based Roadmap of Trees for Large-Scale Motion Planning, Plaku E, Kavraki LE , IEEE International Conference on Robotics and Automation, April, Barcelona, Spain, p.3879-3884, (2005)

Fast Tree-Based Exploration of State Space for Robots with Dynamics, Ladd AM, Kavraki LE, and and van der Erdmann M. and Hsu ODMAF , Algorithmic Foundations of Robotics VI, p.297-312, (2005)

Improving Conformational Searches by Geometric Screening, Zhang M, White RA, Wang L, Goldman R, Kavraki LE, Hassett B , Bioinformatics, Volume 21, Number 5, p.624-630, (2005)

Motion Planning in the Presence of Drift, Underactuation and Discrete System Changes, Ladd AM, Kavraki LE , Robotics: Science and Systems I, June, Boston, MA, p.233-241, (2005)

Path Planning for Variable Resolution Minimal-Energy Curves of Constant Length, Moll M, Kavraki LE , Proc. 2005 IEEE Intl. Conf. on Robotics and Automation, April, Barcelona, Spain, p.2143-2147, (2005)

Principles of Robot Motion: Theory, Algorithms, and Implementation, Choset H, Burgard W, Hutchinson S, Kantor G, Kavraki LE, Lynch K, Thrun S , June, (2005)

Probabilistic Roadmaps of Trees for Parallel Computation of Multiple Query Roadmaps, Akinc M, Bekris KE, Chen BY, Ladd AM, Plaku E, Kavraki LE, Dario P. and Chatila R , Robotic Research: The Eleventh International Symposium, p.80-89, (2005)

Robot Homing by Exploiting Panoramic Vision, Argyros AA, Bekris KE, Orfanoudakis SC, Kavraki LE , Autonomous Robots, Volume 19, Number 1, p.7-25, (2005)

Robotics-Based Location Sensing using Wireless Ethernet (Invited), Ladd AM, Bekris KE, Rudys A, Marceau G, Kavraki LE, Wallach DS , Wireless Networks (The Journal of Mobile Communication, Computation and Information), January, Volume 11, Number 1-2, p.189-204, (2005)

Sampling-Based Roadmap of Trees for Parallel Motion Planning, Plaku E, Bekris KE, Chen BY, Ladd AM, Kavraki LE , IEEE Transactions on Robotics, Volume 21, Number 4, p.597-608, (2005)

2004
Angle-Based Methods for Mobile Robot Navigation: Reaching the Entire Plane, Bekris KE, Argyros AA, Kavraki LE , Proceedings of The IEEE International Conference on Robotics and Automation (ICRA), April, New Orleans, LA, p.2373--2378, (2004)

Guided Expansive Spaces Trees: A Search Strategy for Motion- and Cost-Constrained State Spaces, Phillips JM, Bedrosian N, Kavraki LE , Proceedings of The IEEE International Conference on Robotics and Automation (ICRA), April, New Orleans, LA, p.3968-3973, (2004)

Measure Theoretic Analysis of Probabilistic Path Planning, Ladd AM, Kavraki LE , IEEE Transactions on Robotics and Automation, April, Volume 20, Number 2, p.229-242, (2004)

Motion Planning for Knot Untangling, Ladd AM, Kavraki LE , Algorithmic Foundations of Robotics V, p.7-23, (2004)

On the Feasibility of Using Wireless Ethernet for Indoor Localization, Ladd AM, Bekris KE, Rudys A, Kavraki LE, Wallach DS , IEEE Transactions on Robotics and Automation, June, Volume 20, Issue 3, Number 3, p.555-559, (2004)

On Flexible Docking Using Expansive Search, Moll M, Schwarz D, Heath A, Kavraki LE , Number 04-443, Houston, TX, (2004)