Fast and Reliable Analysis of Molecular Motion Using Proximity Relations and Dimensionality Reduction,
Plaku E, Stamati H, Clementi C, Kavraki LE
, Proteins: Structure, Function, and Bioinformatics, Volume 67, Number 4, p.897--907, (2007)
From coarse-grain to all-atom: Toward multiscale analysis of protein landscapes,
Heath AP, Kavraki LE, Clementi C
, Proteins: Structure, Function and Bioinformatics, Aug, Volume 68, Number 3, p.646-661, (2007)
Low-dimensional Free-energy Landscapes of Protein-Folding Reactions by Nonlinear Dimensionality Reduction,
Das P, Moll M, Stamati H, Kavraki LE, Clementi C
, Proceedings of the National Academy of Sciences, June 17, Volume 103, Number 26, p.9885-9890, (2006)