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Das P, Moll M, Stamati H, Kavraki LE, Clementi C. 2006. Low-dimensional Free-energy Landscapes of Protein-Folding Reactions by Nonlinear Dimensionality Reduction. Proceedings of the National Academy of Sciences. 103:9885-9890.
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Plaku E, Stamati H, Clementi C, Kavraki LE. 2007. Fast and Reliable Analysis of Molecular Motion Using Proximity Relations and Dimensionality Reduction. Proteins: Structure, Function, and Bioinformatics. 67:897--907.
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Stamati H, Clementi C, Kavraki LE. 2010. Application of nonlinear dimensionality reduction to characterize the conformational landscape of small peptides. Proteins. 78:223-235.
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Stamati H. 2007. Analysis of Molecular Motion using Non-Linear Dimensionality Reduction. Department of Computer Science.
Abstract