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2010

Stamati, H, Clementi C, Kavraki LE. 2010. Application of nonlinear dimensionality reduction to characterize the conformational landscape of small peptides. Proteins. 78:223-235.
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2007

Stamati, H. 2007. Analysis of Molecular Motion using Non-Linear Dimensionality Reduction. Department of Computer Science.
Abstract

Plaku, E, Stamati H, Clementi C, Kavraki LE. 2007. Fast and Reliable Analysis of Molecular Motion Using Proximity Relations and Dimensionality Reduction. Proteins: Structure, Function, and Bioinformatics. 67:897--907.
Abstract

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2006

Das, P, Moll M, Stamati H, Kavraki LE, Clementi C. 2006. Low-dimensional Free-energy Landscapes of Protein-Folding Reactions by Nonlinear Dimensionality Reduction. Proceedings of the National Academy of Sciences. 103:9885-9890.
Abstract

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