Biblio

Export 160 results:
Sort by: Author [ Title (Asc)] Type Year
Filters: Author is L. E. Kavraki  [Clear All Filters]
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 
A
Yao H, Kristensen DM, Mihalek I, Sowa M, Shaw C, Kimmel M, Kavraki LE, Lichtarge O.  2003.  An Accurate, Sensitive, and Scalable Method to Identify Functional Sites in Protein Structures. Journal of Molecular Biology. 326:255-261.
Abstract           Publisher's web site     
Agrawal PK, Guibas LJ, Edelsbrunner H, Erickson J, Isard M, Har-Peled S, Hershberger J, Jensen C, Kavraki LE, Koehl P et al..  2002.  Algorithmic Issues in Modeling Motion. ACM Computing Surveys. 34:550-572.
Abstract           Publisher's web site     
Chen BY, Fofanov VY, Kristensen DM, Kimmel M, Lichtarge O, Kavraki LE.  2005.  Algorithms for Structural Comparison and Statistical Analysis of 3D Protein Motifs. Pacific Symposium on Biocomputing.
Kavraki LE.  1999.  Algorithms in Robotics: The Motion Planning Perspective. Frontiers of Engineering Publication. :90-93.
Kavraki LE, Kolountzakis MN, Latombe J-C.  1998.  Analysis of Probabilistic Roadmaps for Path Planning. IEEE Transactions on Robotics and Automation. 14(1):166-171.
Abstract      Preprint PDF     Publisher's web site     
Kavraki LE, Kolountzakis MN, Latombe J-C.  1996.  Analysis of Probabilistic Roadmaps for Path Planning. Proceeedings of The 1996 International Conference on Robotics and Automation (ICRA 1996). :3020-3026.
Preprint PDF
Bryant DH, Moll M, Chen BY, Fofanov VY, Kavraki LE.  2010.  Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction. BMC Bioinformatics. 11:242.
Abstract      Preprint PDF     Publisher's web site     
Bekris KE, Argyros AA, Kavraki LE.  2004.  Angle-Based Methods for Mobile Robot Navigation: Reaching the Entire Plane. Proceedings of The IEEE International Conference on Robotics and Automation (ICRA). :2373--2378.
Abstract      Preprint PDF     Publisher's web site     
Stamati H, Clementi C, Kavraki LE.  2010.  Application of nonlinear dimensionality reduction to characterize the conformational landscape of small peptides. Proteins. 78:223-235.
Abstract           Publisher's web site     
Zhang M, Kavraki LE.  2002.  Approximating Solutions of Molecular Inverse Kinematics Problems by Subdivision. The 24th International Conference of the IEEE Engineering in Medicine and Biology Society (EMBS) and the Annual Meeting of the Biomedical Engineering Society (BMES). :2182-2183.
Abstract           Publisher's web site     
B
Heath AP, Balázsi G, Kavraki LE.  2008.  Bipolarity of the saccharomyces cerevisiae genome. International Conference on Bioinformatics and Biomedical Engineering (iCBBE). :330–333.
Abstract           Publisher's web site     
C
Hsu D, Kavraki LE, Latombe J-C, Motwani R, Rolim J.  1999.  Capturing the Connectivity of High-Dimensional Geometric Spaces by Parallelizable Random Sampling Techniques. Parallel and Distributed Processing. 1388:330-340.
Preprint PDF
Chen BY, Bryant DH, Fofanov VY, Kristensen DM, Cruess AE, Kimmel M, Lichtarge O, Kavraki LE.  2007.  Cavity Scaling: Automated Refinement of Cavity-Aware Motifs in Protein Function Prediction. Journal of Bioinformatics and Computational Biology. 5:353-382.
Abstract      Preprint PDF
Chen BY, Bryant DH, Fofanov VY, Kristensen DM, Cruess AE, Kimmel M, Lichtarge O, Kavraki LE.  2006.  Cavity-Aware Motifs Reduce False Positives in Protein Function Prediction. Systems Bioinformatics Conference (CSB). 4:311-323.
Abstract           Publisher's web site     
Chen BY, Bryant DH, Cruess AE, Bylund JH, Fofanov VY, Kimmel M, Lichtarge O, Kavraki LE.  2007.  Composite Motifs Integrating Multiple Protein Structures Increase Sensitivity for Function Prediction. Computational Systems Bioinformatics Conference (CSB2007). :343-355.
Abstract      Preprint PDF
Kavraki LE.  1995.  Computation of Configuration Space Obstacles Using the Fast Fourier Transform. IEEE Transactions on Robotics and Automation. 11:408-413.
Abstract      Preprint PDF     Publisher's web site     
Kavraki LE.  1993.  Computation of configuration-space obstacles using the fast Fourier transform. IEEE International Conference on Robotics and Automation. 3:255-261.
Abstract           Publisher's web site     
Finn PW, Kavraki LE.  1999.  Computational Approaches to Drug Design. Algorithmica. 25:347-371.
Preprint PDF
Heath AP, Kavraki LE.  2009.  Computational Challenges in Systems Biology. Computer Science Review. 3:1-17.
Abstract      Preprint PDF     Publisher's web site     
Teodoro ML, Kavraki LE.  2003.  Conformational Flexibility Models for the Receptor in Structure Based Drug Design. Current Pharmaceutical Design. 9:1419-1431.
Abstract      Preprint PDF     Publisher's web site     
D
Bekris KE, Tsianos K, Kavraki LE.  2007.  A Decentralized Planner that Guarantees the Safety of Communicating Vehicles with Complex Dynamics that Replan Online. IEEE/RSJ Intl. Conf. on Intelligent Robots and Systems.
Abstract      Preprint PDF
Brock O, Kavraki LE.  2001.  Decomposition-Based Motion Planning: A Framework for Real-Time Motion Planning in High-Dimensional Configuration Places. Proceedings of The 2001 IEEE International Conference on Robotics and Automation (ICRA). :1469-1475.
Preprint PDF
Anshelevich E, Owens S, Lamiraux F, Kavraki LE.  2000.  Deformable Volumes in Path Planning Applications. Proceedings of The IEEE International Conference on Robotics and Automation (ICRA). 3:2290-2295.
Abstract      Preprint PDF     Publisher's web site     
Teodoro ML, Jr. GPN, Kavraki LE.  2002.  A Dimensionality Reduction Approach to Modeling Protein Flexibility. Proceedings of the 2002 ACM International Conference on Research in Computational Biology (RECOMB 2002). :299-308.
Abstract           Publisher's web site     
Plaku E, Kavraki LE, Vardi MY.  2008.  Discrete Search Leading Continuous Exploration for Kinodynamic Motion Planning. Robotics: Science and Systems. :326-333.
Abstract      Preprint PDF     Publisher's web site     
Plaku E, Kavraki LE.  2007.  Distributed Computation of the knn Graph for Large High-Dimensional Point Sets. Journal of Parallel and Distributed Computing. 67:346--359.
Abstract      Preprint PDF     Publisher's web site     
Bekris KE, Tsianos K, Kavraki LE.  2007.  A Distributed Protocol for Safe Real-Time Planning of Communicating Vehicles with Second-Order Dynamics. First International Conference on Robot Communication and Coordination (ROBOCOMM 07).
Abstract      Preprint PDF
Plaku E, Kavraki LE.  2005.  Distributed Sampling-Based Roadmap of Trees for Large-Scale Motion Planning. IEEE International Conference on Robotics and Automation. :3879-3884.
Abstract      Preprint PDF     Publisher's web site     
Bohringer K-F, Donald BR, Kavraki LE, Lamiraux F.  2000.  A Distributed, Universal Device for Planar Parts Feeding: Unique Part Orientation in Programmable Vector Fields. Distributed Manipulation. :1-29.
Preprint PDF
E
LaValle S, Finn PW, Kavraki LE, Latombe J-C.  1999.  Efficient Database Screening for Rational Drug Design Using Pharmacophore-Constrained Conformational Search. The Third ACM International Conference on Computational Biology (RECOMB). :250-259.
Preprint PDF     Publisher's web site     
Zhang M, Kavraki LE.  2001.  Efficiently Maintaining Molecular Conformations Using Local Frames. Currents in Computational Molecular Biology. :97-98.
Haspel N, Ricklin D, Geisbrecht B, Lambris JD, Kavraki LE.  2008.  Electrostatic Contributions Drive the Interaction Between Staphylococcus aureus Protein Efb-C and its Complement Target C3d.. Protein Science. 17(11):1894-1906.
Abstract           Publisher's web site     
Bekris KE, Glick M, Kavraki LE.  2006.  Evaluation of Algorithms for Bearing-Only SLAM. Proceedings of The IEEE International Conference on Robotics and Automation (ICRA). :1937-1944.
Abstract      Preprint PDF     Publisher's web site     
Bekris KE, Argyros AA, Kavraki LE.  2006.  Exploiting Panoramic Vision for Angle-Based Robot Navigation. Lecture Notes in Computer Science, Vol. 33. :229-251.
Abstract      Preprint PDF
F
Plaku E, Kavraki LE, Vardi MY.  2009.  Falsification of LTL Safety Properties in Hybrid Systems. Proc. of the Conf. on Tools and Algorithms for the Construction and Analysis of Systems (TACAS 2009).
Abstract      Preprint PDF
Plaku E, Stamati H, Clementi C, Kavraki LE.  2007.  Fast and Reliable Analysis of Molecular Motion Using Proximity Relations and Dimensionality Reduction. Proteins: Structure, Function, and Bioinformatics. 67:897--907.
Abstract           Publisher's web site     
Ladd AM, Kavraki LE.  2005.  Fast Tree-Based Exploration of State Space for Robots with Dynamics. Algorithmic Foundations of Robotics VI. :297-312.
Abstract      Preprint PDF     Publisher's web site     
Heath AP, Bennett GN, Kavraki LE.  2010.  Finding Metabolic Pathways Using Atom Tracking. Bioinformatics. 26:1548-1555.
Abstract      Preprint PDF     Publisher's web site     
Holleman C, Kavraki LE.  2000.  A Framework for Using the Workspace Medial Axis in PRM Planners. Proceedings of the 2000 International Conference on Robotics and Automation (ICRA 2000 ). 2:1408-1413.
Abstract      Preprint PDF     Publisher's web site     
Heath AP, Kavraki LE, Clementi C.  2007.  From coarse-grain to all-atom: Toward multiscale analysis of protein landscapes. Proteins: Structure, Function and Bioinformatics. 68:646-661.
Abstract           Publisher's web site     
G
Ladd AM, Kavraki LE.  2002.  Generalizing the Analysis of PRM. Proceedings of the 2002 IEEE International Conference on Robotics and Automation (ICRA 2002). :2120-2125.
Abstract      Preprint PDF     Publisher's web site     
Sudsang A, Kavraki LE.  2001.  A Geometric Approach to Designing a Programmable Force Field with a Unique Stable Equilibrium for Parts in the Plane. Proceedings of The 2001 IEEE International Conference on Robotics and Automation (ICRA 2001). 2:1079-1085.
Abstract      Preprint PDF     Publisher's web site     
Finn PW, Halperin D, Kavraki LE, Latombe J-C, Motwani R, Shelton C, Venkat S.  1996.  Geometric Manipulation of Flexible Ligands. LNCS Series Applied Computational Geometry - Towards Geometric Engineering. 1148:67-78.
Preprint PDF     Publisher's web site     
Chen BY, Fofanov VY, Bryant DH, Dodson BD, Kristensen DM, Lisewski AM, Kimmel M, Lichtarge O, Kavraki LE.  2006.  Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function Prediction. Research in Computational Biology: 10th Annual International Conference (RECOMB).
Abstract           Publisher's web site     
Kavraki LE.  1997.  Geometry and the Discovery of New Ligands. Algorithms for Robotic Motion and Manipulation (WAFR 1996). :435-448.
Preprint PDF
Bekris KE, Kavraki LE.  2007.  Greedy but Safe Replanning under Kinodynamic Constraints. Intl. Conf. on Robotics and Automation. :704-710.
Abstract      Preprint PDF     Publisher's web site     
Phillips J, Bedrosian N, Kavraki LE.  2004.  Guided Expansive Spaces Trees: A Search Strategy for Motion- and Cost-Constrained State Spaces. Proceedings of The IEEE International Conference on Robotics and Automation (ICRA). :3968-3973.
Abstract      Preprint PDF     Publisher's web site     
H
Plaku E, Kavraki LE, Vardi MY.  2007.  Hybrid Systems: From Verification to Falsification. International Conference on Computer Aided Verification (CAV). 4590:468--481.
Abstract      Preprint PDF     Publisher's web site     
Plaku E, Kavraki LE, Vardi MY.  2009.  Hybrid systems: from verification to falsification by combining motion planning and discrete search. Formal Methods in System Design. 34:157-182.
Abstract      Preprint PDF     Publisher's web site     
I
Plaku E, Kavraki LE, Vardi MY.  2008.  Impact of Workspace Decompositions on Discrete Search Leading Continuous Exploration (DSLX) Motion Planning. IEEE International Conference on Robotics and Automation. :3751-3756.
Abstract