Biblio

Export 160 results:
Sort by: [ Author (Desc)] Title Type Year
Filters: Author is L. E. Kavraki  [Clear All Filters]
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 
Z
Zhang M, White RA, Wang L, Goldman R, Kavraki LE, Hassett B.  2005.  Improving Conformational Searches by Geometric Screening. Bioinformatics. 21:624-630.
Abstract      Preprint PDF     Publisher's web site     
Zhang M, Kavraki LE.  2002.  Approximating Solutions of Molecular Inverse Kinematics Problems by Subdivision. The 24th International Conference of the IEEE Engineering in Medicine and Biology Society (EMBS) and the Annual Meeting of the Biomedical Engineering Society (BMES). :2182-2183.
Abstract           Publisher's web site     
Zhang M, Kavraki LE.  2002.  A New Method for Fast and Accurate Derivation of Molecular Conformations. Journal of Chemical Information and Computer Sciences. 42:64-70.
Abstract      Preprint PDF     Publisher's web site     
Zhang M, Kavraki LE.  2001.  Efficiently Maintaining Molecular Conformations Using Local Frames. Currents in Computational Molecular Biology. :97-98.
Zhang M, Kavraki LE.  2002.  Solving Molecular Inverse Kinematics Problems for Protein Folding and Drug Design. Currents in Computational Molecular Biology. :214-215.
Y
Yao H, Kristensen DM, Mihalek I, Sowa M, Shaw C, Kimmel M, Kavraki LE, Lichtarge O.  2003.  An Accurate, Sensitive, and Scalable Method to Identify Functional Sites in Protein Structures. Journal of Molecular Biology. 326:255-261.
Abstract           Publisher's web site     
Yakey J, LaValle S, Kavraki LE.  2001.  Randomized Path Planning for Linkages with Closed Kinematics Chains. IEEE Transactions on Robotics and Automation. 17:951-959.
Abstract      Preprint PDF     Publisher's web site     
W
Wilson RH, Kavraki LE, Latombe J-C, Lozano-Perez T.  1995.  Two-Handed Assembly Sequencing. International Journal of Robotics Research. 14(4):335-350.
Abstract      Preprint PDF     Publisher's web site     
T
Tsianos K, Halperin D, Kavraki LE, Latombe J-C, Attalah M.  2008.  Robot Algorithms. Algorithms and Theory of Computation Handbook.
Tsianos K, Sucan IA, Kavraki LE.  2007.  Sampling-based robot motion planning: Towards realistic applications. Computer Science Review. 1(1):2--11.
Abstract      Preprint PDF     Publisher's web site     
Tsianos K, Kavraki LE.  2008.  Replanning: A powerful planning strategy for hard kinodynamic problems. IEEE/RSJ International Conference on Intelligent Robots and Systems. :1667-1672.
Abstract      Preprint PDF
Teodoro ML, Jr. GPN, Kavraki LE.  2000.  Singular Value Decomposition of Protein Conformational Motions: Application to HIV-1 Protease. Currents in Computational Molecular Biology. :198-199.
Teodoro ML, Kavraki LE.  2003.  Conformational Flexibility Models for the Receptor in Structure Based Drug Design. Current Pharmaceutical Design. 9:1419-1431.
Abstract      Preprint PDF     Publisher's web site     
Teodoro ML, Jr. GPN, Kavraki LE.  2001.  Molecular Docking: A Problem with Thousands of Degrees of Freedom. Proc. of the 2001 IEEE International Conference on Robotics and Automation (ICRA 2001). :960-966.
Abstract      Preprint PDF     Publisher's web site     
Teodoro ML, Jr. GPN, Kavraki LE.  2002.  A Dimensionality Reduction Approach to Modeling Protein Flexibility. Proceedings of the 2002 ACM International Conference on Research in Computational Biology (RECOMB 2002). :299-308.
Abstract           Publisher's web site     
Teodoro ML, Jr. GPN, Kavraki LE.  2003.  Understanding Protein Flexibility through Dimensionality Reduction. The Journal of Computational Biology. 10:617-634.
Abstract      Preprint PDF     Publisher's web site     
Teodoro ML, Kavraki LE.  2002.  Pharmacology. Handbook of Data Mining and Knowledge Discovery. :808-816.
S
Sudsang A, Kavraki LE.  2001.  A Geometric Approach to Designing a Programmable Force Field with a Unique Stable Equilibrium for Parts in the Plane. Proceedings of The 2001 IEEE International Conference on Robotics and Automation (ICRA 2001). 2:1079-1085.
Abstract      Preprint PDF     Publisher's web site     
Sudsang A, Kavraki LE.  2001.  Part Orientation with a Force Field: Orienting Multiple Shapes using a Single Field. Proceedings of The 2001 IEEE/RJS International Conference on Intelligent Robots and Systems (IROS 2001). 1:208-213.
Abstract      Preprint PDF     Publisher's web site     
Sucan IA, Kavraki LE.  2010.  On the Implementation of Single-Query Sampling-Based Motion Planners. IEEE International Conference on Robotics and Automation. :2005-2011.
Preprint PDF     Publisher's web site     
Sucan IA, Kavraki LE.  2009.  Kinodynamic Motion Planning by Interior-Exterior Cell Exploration. Algorithmic Foundation of Robotics VIII (Proceedings of Workshop on the Algorithmic Foundations of Robotics). 57:449-464.
Abstract      Preprint PDF     Publisher's web site     
Sucan IA, Kruse JF, Yim M, Kavraki LE.  2008.  Reconfiguration for modular robots using kinodynamic motion planning. ASME -- Dynamic Systems and Control.
Sucan IA, Kavraki LE.  2009.  On the Performance of Random Linear Projections for Sampling-Based Motion Planning. IEEE/RSJ International Conference on Intelligent Robots and Systems. :2434-2439.
Preprint PDF     Publisher's web site     
Sucan IA, Kruse JF, Yim M, Kavraki LE.  2008.  Kinodynamic Motion Planning with Hardware Demonstrations. IEEE/RSJ International Conference on Intelligent Robots and Systems. :1661--1666.
Abstract      Preprint PDF     Publisher's web site     
Stamati H, Clementi C, Kavraki LE.  2010.  Application of nonlinear dimensionality reduction to characterize the conformational landscape of small peptides. Proteins. 78:223-235.
Abstract           Publisher's web site     
Shehu A, Clementi C, Kavraki LE.  2006.  Modeling Protein Conformational Ensembles: From Missing Loops to Equilibrium Fluctuations. Proteins: Structure, Function and Bioinformatics. 65:164-179.
Abstract           Publisher's web site     
Shehu A, Clementi C, Kavraki LE.  2007.  Sampling Conformation Space to Model Equilibrium Fluctuations in Proteins. Algorithmica. 48(4):303-327.
Abstract           Publisher's web site     
Shehu A, Kavraki LE, Clementi C.  2009.  Multiscale characterization of protein conformational ensembles. Proteins. 76:837-851.
Abstract           Publisher's web site     
Shehu A, Kavraki LE, Clementi C.  2007.  On the Characterization of Protein Native State Ensembles. Biophysical Journal. 92:1503-1511.
Abstract           Publisher's web site     
Shehu A, Kavraki LE, Clementi C.  2008.  Unfolding the Fold of Cyclic Cysteine-rich Peptides. Protein Science. 17(3):482-493.
Abstract           Publisher's web site     
Schweikard A, Tombropoulos R, Kavraki LE, Adler J, Latombe J-C.  1994.  Treatment Planning for a Radiosurgical System with General Kinematics. Proceedings of the IEEE/RJS International Conference on Robotics and Automation (ICRA). :1764-1771.
Abstract      Preprint PDF     Publisher's web site     
Schwarz D, Kavraki LE.  2007.  Protein-Ligand Interactions: Computational Docking. Encyclopedia of Life Sciences. :Article#A4105.
Abstract           Publisher's web site     
R
Rusu RB, Sucan IA, Gerkey BP, Chitta S, Beetz M, Kavraki LE.  2009.  Real-Time Perception-Guided Motion Planning for a Personal Robot. IEEE/RSJ International Conference on Intelligent Robots and Systems. :4245-4252.
Preprint PDF     Publisher's web site     
Ricklin D, Ricklin-Lichtsteiner SK, Sfyroera G, Chen H, Tzekou A, Magotti P, Wu Y-Q, Garcia BL, McWorther WJ, Haspel N et al..  2008.  Novel insights into target specificities and molecular mechanisms for two potent complement evasion proteins from Staphylococcus aureus.. XXII International Complement Workshop.
Abstract           Publisher's web site     
P
Plaku E, Bekris KE, Chen BY, Ladd AM, Kavraki LE.  2005.  Sampling-Based Roadmap of Trees for Parallel Motion Planning. IEEE Transactions on Robotics. 21:597-608.
Abstract      Preprint PDF     Publisher's web site     
Plaku E, Kavraki LE.  2007.  Nonlinear Dimensionality Reduction Using Approximate Nearest Neighbors. SIAM International Conference on Data Mining (SDM). :3711-3716.
Abstract      Preprint PDF     Publisher's web site     
Plaku E, Kavraki LE, Vardi MY.  2007.  Hybrid Systems: From Verification to Falsification. International Conference on Computer Aided Verification (CAV). 4590:468--481.
Abstract      Preprint PDF     Publisher's web site     
Plaku E, Kavraki LE.  2005.  Distributed Sampling-Based Roadmap of Trees for Large-Scale Motion Planning. IEEE International Conference on Robotics and Automation. :3879-3884.
Abstract      Preprint PDF     Publisher's web site     
Plaku E, Bekris KE, Kavraki LE.  2007.  OOPS for Motion Planning: An Online Open-source Programming System. IEEE International Conference on Robotics and Automation (ICRA). :3711-3716.
Abstract      Preprint PDF     Publisher's web site     
Plaku E, Kavraki LE, Vardi MY.  2009.  Hybrid systems: from verification to falsification by combining motion planning and discrete search. Formal Methods in System Design. 34:157-182.
Abstract      Preprint PDF     Publisher's web site     
Plaku E, Kavraki LE, Vardi MY.  2008.  Discrete Search Leading Continuous Exploration for Kinodynamic Motion Planning. Robotics: Science and Systems. :326-333.
Abstract      Preprint PDF     Publisher's web site     
Plaku E, Kavraki LE.  2006.  Quantitative Analysis of Nearest Neighbors Search in High-Dimensional Sampling-based Motion Planning. Workshop on Algorithmic Foundations of Robotics (WAFR).
Abstract      Preprint PDF     Publisher's web site     
Plaku E, Stamati H, Clementi C, Kavraki LE.  2007.  Fast and Reliable Analysis of Molecular Motion Using Proximity Relations and Dimensionality Reduction. Proteins: Structure, Function, and Bioinformatics. 67:897--907.
Abstract           Publisher's web site     
Plaku E, Kavraki LE, Vardi MY.  2009.  Falsification of LTL Safety Properties in Hybrid Systems. Proc. of the Conf. on Tools and Algorithms for the Construction and Analysis of Systems (TACAS 2009).
Abstract      Preprint PDF
Plaku E, Kavraki LE.  2007.  Distributed Computation of the knn Graph for Large High-Dimensional Point Sets. Journal of Parallel and Distributed Computing. 67:346--359.
Abstract      Preprint PDF     Publisher's web site     
Plaku E, Kavraki LE, Vardi MY.  2010.  Motion Planning with Dynamics by a Synergistic Combination of Layers of Planning. IEEE Transactions on Robotics. 26:469-482.
Abstract      Preprint PDF     Publisher's web site     
Plaku E, Kavraki LE, Vardi MY.  2007.  A Motion Planner for a Hybrid Robotic System with Kinodynamic Constraints. IEEE International Conference on Robotics and Automation (ICRA). :692--697.
Abstract      Preprint PDF     Publisher's web site     
Plaku E, Kavraki LE, Vardi MY.  2008.  Impact of Workspace Decompositions on Discrete Search Leading Continuous Exploration (DSLX) Motion Planning. IEEE International Conference on Robotics and Automation. :3751-3756.
Abstract     
Phillips J, Kavraki LE, Bedrosian N.  2003.  Spacecraft Rendezvous and Docking With Real-Time Randomized Optimization. AIAA (American Institute of Aeronautics and Astronautics) Guidance, Navigation and Control Conference.
Preprint PDF
Phillips J, Ladd AM, Kavraki LE.  2002.  Simulated Knot Tying. Proceedings of The 2002 IEEE International Conference on Robotics and Automation (ICRA 2002). :841-846.
Abstract      Preprint PDF     Publisher's web site