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Dhanik A, van den Bedem H, Deacon AM, Latombe JC.  2008.  Modeling Structural Heterogeneity in Proteins From X-Ray Data. 8th Workshop on Algorithmic Foundations of Robotics (WAFR'08). :551-566.
Dhanik A, Kavraki L.  2012.  Protein-ligand interactions: computational docking. eLS. John Wiley & Sons Ltd.
Abstract      Preprint PDF     Publisher's web site     
Dhanik A.  2005.  Development of a Palpable Virtual Nylon Thread and Handling of Bifurcations. Masters Thesis
Dhanik A, McMurray JS, Kavraki LE.  2012.  AUTODOCK-based Incremental Docking Protocol to Improve Docking of Large Ligands. IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW). :48-55.
Abstract      Preprint PDF
Dhanik A.  2010.  Computational Modeling of Structural Heterogeneity in Folded Proteins. PhD Thesis
Dhanik A, Yao P, Marz N, Propper R, Kou C, Liu G, van den Bedem H, Latombe JC.  2007.  Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops. 7th Workshop on Algorithms in Bioinformatics (WABI’07). :265-276.
Dhanik A, McMurray JS, Kavraki LE.  2012.  Binding Modes of Peptidomimetics Designed to Inhibit STAT3. PLoS ONE. 7(12):e51603.
Abstract      Preprint PDF     Publisher's web site     
Dhanik A, McMurray JS, Kavraki LE.  2011.  On modeling peptidomimetics in complex with the SH2 domain of Stat3. 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC ’11). :3329-3332.
Abstract      Preprint PDF     Publisher's web site     
Das P, Moll M, Stamati H, Kavraki LE, Clementi C.  2006.  Low-dimensional Free-energy Landscapes of Protein-Folding Reactions by Nonlinear Dimensionality Reduction. Proceedings of the National Academy of Sciences. 103:9885-9890.
Abstract      Preprint PDF     Publisher's web site     
Danner T, Kavraki LE.  2000.  Randomized Planning for Short Inspection Paths. Proceedings of The IEEE International Conference on Robotics and Automation (ICRA). 2:971-976.
Abstract      Preprint PDF     Publisher's web site