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2010
Bhatia, A
,
Kavraki LE
,
Vardi MY
. 2010.
Sampling-Based Motion Planning with Temporal Goals
.
IEEE International Conference on Robotics and Automation. :2689-2696.
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Stamati, H
,
Clementi C
,
Kavraki LE
. 2010.
Application of nonlinear dimensionality reduction to characterize the conformational landscape of small peptides
.
Proteins. 78:223-235.
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Bryant, DH
,
Moll M
,
Chen BY
,
Fofanov VY
,
Kavraki LE
. 2010.
Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction
.
BMC Bioinformatics. 11:242.
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Sucan, IA
,
Kalakrishnan M
,
Chitta S
. 2010.
Combining Planning Techniques for Manipulation Using Realtime Perception
.
IEEE International Conference on Robotics and Automation. :2895-2901.
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Heath, AP
,
Bennett GN
,
Kavraki LE
. 2010.
Finding Metabolic Pathways Using Atom Tracking
.
Bioinformatics. 26:1548-1555.
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Sucan, IA
,
Kavraki LE
. 2010.
On the Implementation of Single-Query Sampling-Based Motion Planners
.
IEEE International Conference on Robotics and Automation. :2005-2011.
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Haspel, N
,
Moll M
,
Baker ML
,
Chiu W
,
Kavraki LE
. 2010.
Tracing conformational changes in proteins
.
BMC Structural Biology. 10:S1.
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2009
Sucan, IA
,
Kavraki LE
. 2009.
On the Performance of Random Linear Projections for Sampling-Based Motion Planning
.
IEEE/RSJ International Conference on Intelligent Robots and Systems. :2434-2439.
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Rusu, R B
,
Sucan IA
,
Gerkey BP
,
Chitta S
,
Beetz M
,
Kavraki LE
. 2009.
Real-Time Perception-Guided Motion Planning for a Personal Robot
.
IEEE/RSJ International Conference on Intelligent Robots and Systems. :4245-4252.
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Heath, AP
,
Kavraki LE
. 2009.
Computational Challenges in Systems Biology
.
Computer Science Review. 3:1-17.
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Plaku, E
,
Kavraki LE
,
Vardi MY
. 2009.
Falsification of LTL Safety Properties in Hybrid Systems
.
Proc. of the Conf. on Tools and Algorithms for the Construction and Analysis of Systems (TACAS 2009).
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Plaku, E
,
Kavraki LE
,
Vardi MY
. 2009.
Hybrid systems: from verification to falsification by combining motion planning and discrete search
.
Formal Methods in System Design. 34:157-182.
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Haspel, N
,
Geisbrecht B
,
Lambris JD
,
Kavraki LE
. 2009.
Multi-scale Characterization of the Energy Landscape of Proteins with Application to the C3d/Efb-C Complex
.
Proteins: Structure, function and bioinformatics. 78:1004-1014.
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Shehu, A
,
Kavraki LE
,
Clementi C
. 2009.
Multiscale characterization of protein conformational ensembles
.
Proteins. 76:837-851.
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Bekris, KE
,
Tsianos K
,
Kavraki LE
. 2009.
Safe and Distributed Kinodynamic Replanning for Vehicular networks
.
ACM/Springer Mobile Networks and Applications (MONET). 14:292–308.
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Haspel, N
,
Moll M
,
Baker ML
,
Chiu W
,
Kavraki LE
. 2009.
Tracing Conformational Changes in Proteins
.
IEEE Intl. Conf. on Bioinformatics and Biomedicine Workshops (BIBMW).
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2008
Plaku, E
,
Kavraki LE
,
Vardi MY
. 2008.
Impact of Workspace Decompositions on Discrete Search Leading Continuous Exploration (DSLX) Motion Planning
.
IEEE International Conference on Robotics and Automation. :3751-3756.
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Plaku, E
,
Kavraki LE
,
Vardi MY
. 2008.
Discrete Search Leading Continuous Exploration for Kinodynamic Motion Planning
.
Robotics: Science and Systems. :326-333.
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Bhatia, A
,
Frazzoli E
. 2008.
Decentralized algorithm for minimum-time rendezvous of Dubins vehicles
.
American Control Conference, 2008. :1343-1349.
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Ricklin, D
,
Ricklin-Lichtsteiner SK
,
Sfyroera G
,
Chen H
,
Tzekou A
,
Magotti P
,
Wu Y-Q
,
Garcia BL
,
McWorther WJ
,
Haspel N
et al.
. 2008.
Novel insights into target specificities and molecular mechanisms for two potent complement evasion proteins from Staphylococcus aureus.
.
XXII International Complement Workshop.
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Tsianos, K
,
Kavraki LE
. 2008.
Replanning: A powerful planning strategy for hard kinodynamic problems
.
IEEE/RSJ International Conference on Intelligent Robots and Systems. :1667-1672.
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Bhatia, A
,
Frazzoli E
,
Graziano M
,
Karaman S
,
Naldi R
. 2008.
Dubins Trajectory Tracking using Commercial Off-The-Shelf Autopilots
.
AIAA Guidance, Navigation and Control Conference and Exhibit.
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Pan, VY
,
Grady DK
,
Murphy B
,
Qian G
,
Rosholt RE
,
Ruslanov AD
. 2008.
Schur aggregation for linear systems and determinants
.
Theoretical Computer Science. 409:255-268.
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Haspel, N
,
Ricklin D
,
Geisbrecht B
,
Lambris JD
,
Kavraki LE
. 2008.
Electrostatic Contributions Drive the Interaction Between Staphylococcus aureus Protein Efb-C and its Complement Target C3d.
.
Protein Science. 17(11):1894-1906.
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Bhatia, A
. 2008.
Sampling-based Algorithms for Analysis and Design of Hybrid and Embedded Systems
.
Mechanical and Aerospace Engineering. Ph.D.:156.
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Heath, AP
,
Balázsi G
,
Kavraki LE
. 2008.
Bipolarity of the saccharomyces cerevisiae genome
.
International Conference on Bioinformatics and Biomedical Engineering (iCBBE). :330–333.
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White, RW
,
Richardson M
,
Bilenko M
,
Heath AP
. 2008.
Enhancing web search by promoting multiple search engine use
.
SIGIR ’08: Proceedings of the 31st annual international ACM SIGIR conference on research and development in information retrieval. :43-50.
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Plaku, E
. 2008.
From High-Level Tasks to Low-Level Motions: Motion Planning for High-Dimensional Nonlinear Hybrid Robotic Systems
.
Department of Computer Science.
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Bekris, KE
. 2008.
Informed Planning and Safe Distributed Replanning under Physical Constraints
.
Department of Computer Science.
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Sucan, IA
,
Kavraki LE
. 2008.
Kinodynamic Motion Planning by Interior-Exterior Cell Exploration
.
International Workshop on the Algorithmic Foundations of Robotics.
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Sucan, IA
. 2008.
Kinodynamic Motion Planning for High-dimensional Physical Systems
.
Department of Computer Science.
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Sucan, IA
,
Kruse JF
,
Yim M
,
Kavraki LE
. 2008.
Kinodynamic Motion Planning with Hardware Demonstrations
.
IEEE/RSJ International Conference on Intelligent Robots and Systems. :1661--1666.
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Moll, M
,
Kavraki LE
. 2008.
LabelHash: A Flexible and Extensible Method for Matching Structural Motifs
.
Automated Function Prediction / BioSapiens meeting (AFP-BioSapiens).
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Moll, M
,
Kavraki LE
. 2008.
Matching of Structural Motifs Using Hashing on Residue Labels and Geometric Filtering for Protein Function Prediction
.
The Seventh Annual International Conference on Computational Systems Bioinformatics (CSB2008). :157-168.
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Shehu, A
. 2008.
Molecules in Motion: Computing Structural Flexibility
.
Department of Computer Science.
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Kristensen, DM
,
Ward MR
,
Lisewski AM
,
Edrin S
,
Chen BY
,
Fofanov VY
,
Kimmel M
,
Lichtarge O
. 2008.
Prediction of enzyme function based on 3D templates of evolutionarily important amino acids
.
BMC Bioinformatics. 9(17)
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Sucan, IA
,
Kruse JF
,
Yim M
,
Kavraki LE
. 2008.
Reconfiguration for modular robots using kinodynamic motion planning
.
ASME -- Dynamic Systems and Control.
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Tsianos, K
. 2008.
Replanning: A Powerful Planning Strategy for Systems with Differential Constraints
.
Department of Computer Science.
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Tsianos, K
,
Halperin D
,
Kavraki LE
,
Latombe J-C
,
Attalah M
. 2008.
Robot Algorithms
.
Algorithms and Theory of Computation Handbook.
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Bhatia, A
,
Frazzoli E
. 2008.
Sampling-Based Resolution-Complete Algorithms for Safety Falsification of Linear Systems
.
Hybrid Systems: Computation and Control, 2008. :606-609.
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Moll, M
,
Rus D
. 2008.
Special Issue on Self-Reconfiguring Modular Robots (Guest Editorial)
.
Intl. J. of Robotics Research. 27(3/4):277-278.
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Fofanov, VY
,
Chen BY
,
Bryant DH
,
Moll M
,
Lichtarge O
,
Kavraki LE
,
Kimmel M
. 2008.
A Statistical Model to Correct Systematic Bias Introduced by Algorithmic Thresholds in Protein Structural Comparison Algorithms
.
IEEE Intl. Conf. on Bioinformatics and Biomedicine (BIBM).
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Balázsi, G
,
Heath AP
,
Shi L
,
Gennaro ML
. 2008.
The temporal response of the Mycobacterium tuberculosis gene regulatory network during growth arrest
.
Molecular Systems Biology. 4
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Shehu, A
,
Kavraki LE
,
Clementi C
. 2008.
Unfolding the Fold of Cyclic Cysteine-rich Peptides
.
Protein Science. 17(3):482-493.
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2007
Bekris, KE
,
Tsianos K
,
Kavraki LE
. 2007.
A Distributed Protocol for Safe Real-Time Planning of Communicating Vehicles with Second-Order Dynamics
.
First International Conference on Robot Communication and Coordination (ROBOCOMM 07).
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Moll, M
,
Schwarz D
,
Kavraki LE
. 2007.
Roadmap Methods for Protein Folding
.
Protein Structure Prediction: Methods and Protocols.
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Yim, M
,
Shen W-M
,
Salemi B
,
Rus D
,
Moll M
,
Lipson H
,
Klavins E
. 2007.
Modular Self-reconfigurable Robot Systems: Challenges and Opportunities for the Future
.
IEEE Robotics & Automation Magazine. 14
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Bhatia, A
,
Frazzoli E
. 2007.
Sampling-based resolution-complete safety falsification of linear hybrid systems
.
Decision and Control, 2007 46th IEEE Conference on. :3405-3411.
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Tsianos, K
,
Sucan IA
,
Kavraki LE
. 2007.
Sampling-based robot motion planning: Towards realistic applications
.
Computer Science Review. 1(1):2--11.
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Heath, AP
,
Kavraki LE
,
Clementi C
. 2007.
From coarse-grain to all-atom: Toward multiscale analysis of protein landscapes
.
Proteins: Structure, Function and Bioinformatics. 68:646-661.
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