Found 174 results
2008
2007
Roadmap Methods for Protein Folding,
Moll, M.; Schwarz, D.; Kavraki, L. E.
, Protein Structure Prediction: Methods and Protocols, Oct., (2007)
Modular Self-reconfigurable Robot Systems: Challenges and Opportunities for the Future,
Yim, Mark; Shen, Wei-Min; Salemi, Benham; Rus, Daniela; Moll, Mark; Lipson, Hod; Klavins, Eric
, IEEE Robotics & Automation Magazine, March, Volume 14, Number 1, (2007)
Sampling-based robot motion planning: Towards realistic applications,
Tsianos, K. I.; Sucan, I. A.; Kavraki, L. E.
, Computer Science Review, August, Volume 1, Issue 1, p.2--11, (2007)
From coarse-grain to all-atom: Toward multiscale analysis of protein landscapes,
Heath, A. P.; Kavraki, L. E.; Clementi, C.
, Proteins: Structure, Function and Bioinformatics, Aug, Volume 68, Number 3, p.646-661, (2007)
Greedy but Safe Replanning under Kinodynamic Constraints,
Bekris, K. E.; Kavraki, L. E.
, Intl. Conf. on Robotics and Automation, April, Rome, Italy, p.704-710, (2007)
A hierarchical protein folding scheme based on the building block folding model.,
Haspel, N.; Wainreb, G.; Inbar, Y.; Tsai, H. H.; Tsai, C. J.; Wolfson, H. J.; Nussinov, R.
, Methods in Molecular Biology, Volume 350, Totowa, NJ, p.189-204, (2007)
Cavity Scaling: Automated Refinement of Cavity-Aware Motifs in Protein Function Prediction,
Chen, B. Y.; Bryant, D. H.; Fofanov, V. Y.; Kristensen, D. M.; Cruess, A. E.; Kimmel, M.; Lichtarge, O.; Kavraki, L. E.
, Journal of Bioinformatics and Computational Biology, Volume 5, Number 2a, p.353-382, (2007)
Changing the charge distribution of beta-helical based nanostructures can provide the conditions for charge transfer,
Haspel, N.; Zanuy, D.; Zheng, J.; Aleman, C.; Wolfson, H.; Nussinov, R.
, Biophysics Journal, Volume 93, Issue 1, p.245-253, (2007)
Fast and Reliable Analysis of Molecular Motion Using Proximity Relations and Dimensionality Reduction,
Plaku, E.; Stamati, H.; Clementi, C.; Kavraki, L. E.
, Proteins: Structure, Function, and Bioinformatics, Volume 67, Number 4, p.897--907, (2007)
Hybrid Systems: From Verification to Falsification,
Plaku, E.; Kavraki, L. E.; Vardi, M. Y.
, International Conference on Computer Aided Verification (CAV), Volume 4590, Berlin, Germany, p.468--481, (2007)
Motion Planning,
Kavraki, L. E.; LaValle, S.
, Advanced Series in Robotics, p.In Press, (2007)
Nanostructure design using protein building blocks enhanced by conformationally constrained synthetic residues.,
Zheng, J.; Zanuy, D.; Haspel, N.; Tsai, C. J.; Aleman, C.; Nussinov, R.
, Biochemistry, Volume 46, Number 5, p.1205-1218, (2007)
Nonlinear Dimensionality Reduction Using Approximate Nearest Neighbors,
Plaku, E.; Kavraki, L. E.
, SIAM International Conference on Data Mining (SDM), Minneapolis, Minnesota, p.3711-3716, (2007)
OOPS for Motion Planning: An Online Open-source Programming System,
Plaku, E.; Bekris, K. E.; Kavraki, L. E.
, IEEE International Conference on Robotics and Automation (ICRA), Rome, Italy, p.3711-3716, (2007)
Principles of nanostructure design with protein building blocks,
Tsai, C. J.; Zheng, J.; Zanuy, D.; Haspel, N.; Nussinov, R.
, Proteins, Volume 68, Number 1, p.1-12, (2007)
The MASH Pipeline for Protein Function Prediction and an Algorithm for the Geometric Refinement of 3D Motifs,
Chen, B. Y.; Fofanov, V. Y.; Bryant, D. H.; Dodson, B. D.; Kristensen, D. M.; Lisewski, A. M.; Kimmel, M.; Lichtarge, O.; Kavraki, L. E.
, Journal of Computational Biology, Volume 14, Number 6, p.791-816, (2007)
2006
Distributed Control of the Center of Mass of a Modular Robot,
Moll, Mark; Will, Peter; Krivokon, Maks; Shen, Wei-Min
, Proc. 2006 IEEE/RSJ Intl. Conf. on Intelligent Robots and Systems, October, Beijing, China, p.4710--4715, (2006)
SUPERBOT: A Deployable, Multi-Functional, and Modular Self-Reconfigurable Robotic System,
Salemi, Behnam; Moll, Mark; Shen, Wei-Min
, Proc. 2006 IEEE/RSJ Intl. Conf. on Intelligent Robots and Systems, oct, Beijing, China, p.3636--3641, (2006)
Evaluation of Algorithms for Bearing-Only SLAM,
Bekris, K. E.; Glick, M.; Kavraki, L. E.
, Proceedings of The IEEE International Conference on Robotics and Automation (ICRA), May, Orlando, FL, p.1937-1944, (2006)
Low-dimensional Free-energy Landscapes of Protein-Folding Reactions by Nonlinear Dimensionality Reduction,
Das, P.; Moll, M.; Stamati, H.; Kavraki, L. E.; Clementi, C.
, Proceedings of the National Academy of Sciences, June 17, Volume 103, Number 26, p.9885-9890, (2006)
Cavity-Aware Motifs Reduce False Positives in Protein Function Prediction,
Chen, B. Y.; Bryant, D. H.; Fofanov, V. Y; Kristensen, D. M.; Cruess, A. E.; Kimmel, M.; Lichtarge, O.; Kavraki, L. E.
, Systems Bioinformatics Conference (CSB), August, Volume 4, Stanford, CA, p.311-323, (2006)
Path Planning for Deformable Linear Objects,
Moll, M.; Kavraki, L. E.
, IEEE Transactions on Robotics, Aug., Volume 22, Number 4, p.625-636, (2006)
Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function Prediction,
Chen, B. Y.; Fofanov, V. Y; Bryant, D. H.; Dodson, B. D.; Kristensen, D. M.; Lisewski, A. M.; Kimmel, M.; Lichtarge, O.; Kavraki, L. E.
, Research in Computational Biology: 10th Annual International Conference (RECOMB), April, Venice, Italy, (2006)
Concepts and schemes for the re-engineering of physical protein modules: generating nanodevices via targeted replacements with constrained amino acids,
Aleman, C.; Zanuy, D.; Jimenez, A. I.; Cativiela, C.; Haspel, N.; Zheng, J.; Casanovas, J.; Wolfson, H.; Nussinov, R.
, Physical Biology, Volume 3, Number 1, p.54-62, (2006)
De-novo tubular nanostructure design based on self-assembly of beta-helical protein motifs,
Haspel, N.; Zanuy, D.; Aleman, C.; Wolfson, H.; Nussinov, R.
, Structure, Volume 14, p.1137-1148, (2006)
Modeling Protein Conformational Ensembles: From Missing Loops to Equilibrium Fluctuations,
Shehu, A.; Clementi, C.; Kavraki, L. E.
, Proteins: Structure, Function and Bioinformatics, Volume 65, Number 1, p.164-179, (2006)
Recurrent Use of Evolutionary Importance for Functional Annotation of Proteins Based on Local Structural Similarity,
Kristensen, D. M.; Chen, B. Y.; Fofanov, V. Y.; Ward, R. M.; Lisewski, A. M.; Kimmel, M.; Kavraki, L. E.; Lichtarge, O.
, Protein Science, Volume 15, Number 6, p.1530-1536, (2006)
2005
Motion Planning in the Presence of Drift, Underactuation and Discrete System Changes,
Ladd, A. M.; Kavraki, L. E.
, Robotics: Science and Systems I, June, Boston, MA, p.233-241, (2005)
Principles of Robot Motion: Theory, Algorithms, and Implementation,
Choset, H.; Burgard, W.; Hutchinson, S.; Kantor, G.; Kavraki, L. E.; Lynch, K.; Thrun, S.
, June, (2005)
Robotics-Based Location Sensing using Wireless Ethernet (Invited),
Ladd, A. M.; Bekris, K. E.; Rudys, A.; Marceau, G.; Kavraki, L. E.; Wallach, D. S.
, Wireless Networks (The Journal of Mobile Communication, Computation and Information), January, Volume 11, Number 1-2, p.189-204, (2005)
Distributed Sampling-Based Roadmap of Trees for Large-Scale Motion Planning,
Plaku, E.; Kavraki, L. E.
, IEEE International Conference on Robotics and Automation, April, Barcelona, Spain, p.3879-3884, (2005)
Path Planning for Variable Resolution Minimal-Energy Curves of Constant Length,
Moll, M.; Kavraki, L. E.
, Proc. 2005 IEEE Intl. Conf. on Robotics and Automation, April, Barcelona, Spain, p.2143-2147, (2005)