The LabelHash Server
2ahjA motif
Motif residues: PRO53 LEU120 TYR127 VAL190 ASP193 ILE196
Table of Top 100 matches
Click here for a compact table with the top 100 matches.The images below show the motif residues and the match residues superimposed. The carbon atoms are white in the motif and green in the match. Other atoms in the motif and match are colored by element. The C-alphas are shown as spheres, while the remaining motif and match atoms are shown in stick representation. The rest of the matching protein is shown in ribbon representation.
Downloads
- A zip file with PDB files for the top 100 matches and the motif itself.
- An XML file with all matches. You can open this file in Chimera with our ViewMatch plugin.
Top 20 matches
For each match you can click on the "[pdb]" link to download a PDB file with the matching chain aligned with the motif.1. 2zpiA [pdb]
LRMSD: 0.0811110287905p-value: 2.3939219318e-05
Matching residues: PRO53 LEU120 TYR127 VAL190 ASP193 ILE196
EC class: 4.2.1.84
GO terms:
Molecular function: lyase activity, nitrile hydratase activity, transition metal ion binding, catalytic activity, metal ion binding, lyase activity, iron ion binding, nitrile hydratase activity, transition metal ion binding, catalytic activity
Biological process: photosynthesis, nitrogen compound metabolic process, nitrogen compound metabolic process
Cellular component: plastid
2. 1v29A [pdb]
LRMSD: 0.496674984694p-value: 0.000105756997073
Matching residues: PRO64 LEU131 TYR138 VAL201 ASP204 ILE207
EC class: 0.0.0.0
GO terms:
Molecular function: transition metal ion binding, nitrile hydratase activity, catalytic activity
Biological process: nitrogen compound metabolic process
3. 2dppA [pdb]
LRMSD: 0.513652145863p-value: 0.000114100243081
Matching residues: PRO60 LEU127 TYR134 VAL197 ASP200 ILE203
EC class: 0.0.0.0
GO terms:
Molecular function: transition metal ion binding, nitrile hydratase activity, catalytic activity, transition metal ion binding, nitrile hydratase activity, catalytic activity
Biological process: photosynthesis, nitrogen compound metabolic process, nitrogen compound metabolic process
Cellular component: plastid
4. 2dxbX [pdb]
LRMSD: 0.58067804575p-value: 0.000153174158186
Matching residues: PRO61 LEU139 TYR146 VAL209 ASP212 ILE215
EC class: 3.5.5.8
GO terms:
Molecular function: hydrolase activity, thiocyanate hydrolase activity, catalytic activity, cobalt ion binding, metal ion binding, hydrolase activity, thiocyanate hydrolase activity, transition metal ion binding, catalytic activity, hydrolase activity, thiocyanate hydrolase activity, catalytic activity
Biological process: photosynthesis, nitrogen compound metabolic process, photosynthesis
Cellular component: plastid, plastid
5. 1gpmA [pdb]
LRMSD: 1.27699887753p-value: 0.000251284596743
Matching residues: TYR33 ILE213 ASP216 VAL218 PRO375 LEU376
EC class: 6.3.5.2
GO terms:
Molecular function: ligase activity, ATP binding, nucleotide binding, GMP synthase (glutamine-hydrolyzing) activity, tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity, catalytic activity, protein binding
Biological process: glutamine metabolic process, GMP biosynthetic process, purine nucleotide biosynthetic process, biosynthetic process, tRNA processing
Cellular component: cytosol, cytoplasm
6. 2rdrA [pdb]
LRMSD: 1.31360518932p-value: 0.000267776340479
Matching residues: TYR87 ILE116 PRO155 LEU156 VAL166 ASP244
EC class: 0.0.0.0
GO terms:
7. 2tmkB [pdb]
LRMSD: 1.53074193001p-value: 0.000458032009192
Matching residues: ILE10 TYR26 ASP93 VAL96 PRO126 LEU128
EC class: 2.7.4.9
GO terms:
Molecular function: transferase activity, kinase activity, ATP binding, nucleotide binding, thymidylate kinase activity, uridylate kinase activity, identical protein binding
Biological process: nucleotide biosynthetic process, DNA repair, plasmid maintenance, DNA-dependent DNA replication, dTTP biosynthetic process, dTDP biosynthetic process, dUDP biosynthetic process
Cellular component: nucleus, cytoplasm
8. 3bv0A [pdb]
LRMSD: 1.53352749348p-value: 0.000458070862805
Matching residues: ASP242 ILE243 TYR247 LEU251 VAL274 PRO276
EC class: 2.6.1.62
GO terms:
Molecular function: transferase activity, transaminase activity, adenosylmethionine-8-amino-7-oxononanoate transaminase activity, pyridoxal phosphate binding, catalytic activity
Biological process: biotin biosynthetic process
9. 2ah6B [pdb]
LRMSD: 1.54603850842p-value: 0.000486391800223
Matching residues: PRO106 LEU108 ILE112 VAL167 ASP176 TYR179
EC class: 0.0.0.0
GO terms:
Molecular function: cob(I)yrinic acid a,c-diamide adenosyltransferase activity, ATP binding
Biological process: cobalamin biosynthetic process
10. 2uv9C [pdb]
LRMSD: 1.56287312508p-value: 0.000518046086654
Matching residues: PRO794 TYR829 LEU837 ILE839 VAL889 ASP895
EC class: GO terms:
Molecular function: transferase activity, holo-[acyl-carrier-protein] synthase activity, binding, catalytic activity, magnesium ion binding
Biological process: macromolecule biosynthetic process, biosynthetic process, metabolic process, fatty acid biosynthetic process
11. 1rtyB [pdb]
LRMSD: 1.5941182375p-value: 0.000593500561081
Matching residues: PRO105 LEU107 ILE111 VAL166 ASP175 TYR178
EC class: 2.5.1.17
GO terms:
Molecular function: cob(I)yrinic acid a,c-diamide adenosyltransferase activity, ATP binding, nucleotide binding, transferase activity
Biological process: cobalamin biosynthetic process, porphyrin biosynthetic process
Cellular component: cytoplasm
12. 3bs8A [pdb]
LRMSD: 1.59783244133p-value: 0.000614996999502
Matching residues: ASP228 ILE229 TYR233 LEU237 VAL259 PRO261
EC class: 5.4.3.8
GO terms:
Molecular function: isomerase activity, glutamate-1-semialdehyde 2,1-aminomutase activity, pyridoxal phosphate binding, transaminase activity, catalytic activity
Biological process: porphyrin biosynthetic process, tetrapyrrole biosynthetic process
Cellular component: cytoplasm
13. 1ui7B [pdb]
LRMSD: 1.60507786274p-value: 0.000637730641756
Matching residues: VAL107 PRO136 LEU137 TYR144 ILE152 ASP180
EC class: 1.4.3.21
GO terms:
Molecular function: metal ion binding, oxidoreductase activity, copper ion binding, quinone binding, amine oxidase activity
Biological process: oxidation reduction, amine metabolic process
14. 1oriA [pdb]
LRMSD: 1.66182029247p-value: 0.000858047802467
Matching residues: ILE185 ASP187 VAL222 PRO224 LEU227 TYR262
EC class: 0.0.0.0
GO terms:
Molecular function: transferase activity, methyltransferase activity, protein-arginine omega-N asymmetric methyltransferase activity, snoRNP binding, S-adenosylmethionine-dependent methyltransferase activity, protein methyltransferase activity, protein-arginine omega-N monomethyltransferase activity, histone-arginine N-methyltransferase activity, [cytochrome c]-arginine N-methyltransferase activity, protein binding
Biological process: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine, protein amino acid methylation, peptidyl-arginine methylation, peptidyl-arginine omega-N-methylation
Cellular component: nucleus, protein complex
15. 2vlcB [pdb]
LRMSD: 1.67341792583p-value: 0.000892011681572
Matching residues: TYR232 ASP238 ILE241 VAL503 PRO546 LEU547
EC class: 0.0.0.0
GO terms:
Molecular function: hydrolase activity, rRNA N-glycosylase activity
Biological process: negative regulation of translation, pathogenesis, defense response
16. 2nwuB [pdb]
LRMSD: 1.69182348251p-value: 0.00100341427606
Matching residues: ILE65 ASP67 TYR72 LEU126 PRO128 VAL134
EC class: GO terms:
17. 2zxcA [pdb]
LRMSD: 1.69811797142p-value: 0.00104320945684
Matching residues: VAL362 PRO364 LEU367 ILE376 ASP379 TYR467
EC class: 3.5.1.23
GO terms:
Molecular function: hydrolase activity, ceramidase activity
Biological process: lipid metabolic process
Cellular component: extracellular region
18. 1ofvA [pdb]
LRMSD: 1.70113575459p-value: 0.00104333250783
Matching residues: VAL13 TYR125 ILE143 ASP144 PRO149 LEU151
EC class: GO terms:
Molecular function: oxidoreductase activity, FMN binding, electron carrier activity
Biological process: electron transport chain, response to stress, transport
19. 2iujA [pdb]
LRMSD: 1.70398652554p-value: 0.00104344880674
Matching residues: LEU253 PRO254 TYR270 VAL525 ASP548 ILE552
EC class: 0.0.0.0
GO terms:
Molecular function: metal ion binding, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, oxidoreductase activity, iron ion binding, lipoxygenase activity, electron carrier activity
Biological process: fatty acid biosynthetic process, lipid biosynthetic process, oxylipin biosynthetic process, oxidation reduction
20. 1poiB [pdb]
LRMSD: 1.70778393745p-value: 0.00108409242239
Matching residues: TYR7 LEU33 PRO34 VAL65 ASP253 ILE259
EC class: 2.8.3.12
GO terms:
Molecular function: transferase activity, glutaconate CoA-transferase activity, CoA-transferase activity, transferase activity, glutaconate CoA-transferase activity, CoA-transferase activity
Biological process: metabolic process, metabolic process
Cellular component: cytoplasm, cytoplasm
