The LabelHash Server
1kp3A motif
Motif residues: ARG106 PHE139 GLU202 LYS286 ARG288 TYR331
Table of Top 100 matches
Click here for a compact table with the top 100 matches.The images below show the motif residues and the match residues superimposed. The carbon atoms are white in the motif and green in the match. Other atoms in the motif and match are colored by element. The C-alphas are shown as spheres, while the remaining motif and match atoms are shown in stick representation. The rest of the matching protein is shown in ribbon representation.
Downloads
- A zip file with PDB files for the top 100 matches and the motif itself.
- An XML file with all matches. You can open this file in Chimera with our ViewMatch plugin.
Top 20 matches
For each match you can click on the "[pdb]" link to download a PDB file with the matching chain aligned with the motif.1. 1k97A [pdb]
LRMSD: 0.155416846275p-value: 2.43562026299e-05
Matching residues: ARG106 PHE139 GLU202 LYS286 ARG288 TYR331
EC class: 6.3.4.5
GO terms:
Molecular function: ligase activity, ATP binding, nucleotide binding, argininosuccinate synthase activity, protein binding
Biological process: cellular amino acid biosynthetic process, arginine biosynthetic process
Cellular component: cytoplasm
2. 2nz2A [pdb]
LRMSD: 0.398302316666p-value: 9.25891945371e-05
Matching residues: ARG95 PHE128 GLU191 LYS277 ARG279 TYR322
EC class: 6.3.4.5
GO terms:
Molecular function: ligase activity, ATP binding, nucleotide binding, argininosuccinate synthase activity, protein binding
Biological process: cellular amino acid biosynthetic process, arginine biosynthetic process, urea cycle
Cellular component: cytoplasm
3. 1kh1B [pdb]
LRMSD: 0.449406117201p-value: 0.000116814182547
Matching residues: ARG92 PHE125 GLU184 LYS265 ARG267 TYR310
EC class: 6.3.4.5
GO terms:
Molecular function: ligase activity, ATP binding, nucleotide binding, argininosuccinate synthase activity
Biological process: cellular amino acid biosynthetic process, arginine biosynthetic process
Cellular component: cytoplasm
4. 1vl2B [pdb]
LRMSD: 0.589451372623p-value: 0.000178385671461
Matching residues: ARG93 PHE126 GLU189 LYS275 ARG277 TYR320
EC class: 6.3.4.5
GO terms:
Molecular function: ligase activity, ATP binding, nucleotide binding, argininosuccinate synthase activity
Biological process: cellular amino acid biosynthetic process, arginine biosynthetic process
Cellular component: cytoplasm
5. 1kobA [pdb]
LRMSD: 1.13802528381p-value: 0.000243326066993
Matching residues: TYR26 ARG69 PHE79 GLU134 ARG138 LYS186
EC class: 0.0.0.0
GO terms:
Molecular function: ATP binding, protein serine/threonine kinase activity, protein kinase activity
Biological process: protein amino acid phosphorylation
6. 1m41B [pdb]
LRMSD: 1.24462664127p-value: 0.000287838920485
Matching residues: TYR1174 GLU1208 ARG1211 LYS1220 ARG1226 PHE1326
EC class: 1.14.14.5
GO terms:
Molecular function: oxidoreductase activity, monooxygenase activity, alkanesulfonate monooxygenase activity
Biological process: oxidation reduction
7. 2b5wA [pdb]
LRMSD: 1.36488330364p-value: 0.000343455147231
Matching residues: LYS18 ARG20 GLU22 ARG88 PHE113 TYR123
EC class: 0.0.0.0
GO terms:
Molecular function: oxidoreductase activity, glucose 1-dehydrogenase activity, zinc ion binding, binding, catalytic activity
Biological process: oxidation reduction, metabolic process
8. 2zj8A [pdb]
LRMSD: 1.51197254658p-value: 0.000458616937976
Matching residues: SER50 ARG199 LYS202 PHE316 ARG317 TYR374
EC class: GO terms:
Molecular function: hydrolase activity, ATP binding, helicase activity, nucleotide binding, sequence-specific DNA binding, ATP-dependent helicase activity, protein binding, DNA binding, nucleic acid binding, hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
Biological process: DNA repair
Cellular component: intracellular
9. 2yy3C [pdb]
LRMSD: 1.55090403557p-value: 0.000543996924534
Matching residues: PHE4 ARG11 TYR36 LYS54 ARG60 GLU86
EC class: GO terms:
Molecular function: translation elongation factor activity
Biological process: translation, translational elongation
Cellular component: eukaryotic translation elongation factor 1 complex
10. 1jijA [pdb]
LRMSD: 1.5790681839p-value: 0.000625290675089
Matching residues: SER135 ARG138 LYS142 PHE178 ARG183 TYR211
EC class: 0.0.0.0
GO terms:
Molecular function: ligase activity, ATP binding, aminoacyl-tRNA ligase activity, RNA binding, nucleotide binding, tyrosine-tRNA ligase activity
Biological process: translation, tyrosyl-tRNA aminoacylation, tRNA aminoacylation for protein translation
Cellular component: cytoplasm
11. 2yx1A [pdb]
LRMSD: 1.61178636551p-value: 0.000732166459784
Matching residues: LYS82 ARG85 GLU87 TYR97 PHE134 ARG136
EC class: GO terms:
12. 1igoA [pdb]
LRMSD: 1.62275183201p-value: 0.000797350483481
Matching residues: PHE48 ARG49 TYR70 SER145 ARG147 LYS150
EC class: 0.0.0.0
GO terms:
Molecular function: hydrolase activity, hydrolase activity, acting on glycosyl bonds, endo-1,4-beta-xylanase activity, hydrolase activity, hydrolyzing O-glycosyl compounds
Biological process: metabolic process, xylan catabolic process, carbohydrate metabolic process
13. 2nqyB [pdb]
LRMSD: 1.63100576401p-value: 0.000833276077174
Matching residues: PHE48 ARG49 TYR70 SER146 ARG148 LYS151
EC class: 0.0.0.0
GO terms:
Molecular function: hydrolase activity, hydrolase activity, acting on glycosyl bonds, endo-1,4-beta-xylanase activity, hydrolase activity, hydrolyzing O-glycosyl compounds
Biological process: metabolic process, xylan catabolic process, carbohydrate metabolic process
14. 2olsA [pdb]
LRMSD: 1.63645994663p-value: 0.000833484169561
Matching residues: PHE648 ARG650 TYR695 SER740 ARG743 LYS747
EC class: 2.7.9.2
GO terms:
Molecular function: metal ion binding, transferase activity, kinase activity, ATP binding, magnesium ion binding, nucleotide binding, pyruvate, water dikinase activity, transferase activity, transferring phosphorus-containing groups, catalytic activity
Biological process: phosphorylation, gluconeogenesis
15. 3ck8A [pdb]
LRMSD: 1.64435505867p-value: 0.000910696282517
Matching residues: ARG307 LYS332 TYR386 PHE404 ARG487 GLU492
EC class: 0.0.0.0
GO terms:
16. 1gl9B [pdb]
LRMSD: 1.65677070618p-value: 0.000951435475145
Matching residues: SER781 ARG785 LYS788 PHE802 ARG848 TYR880
EC class: 5.99.1.3
GO terms:
Molecular function: metal ion binding, isomerase activity, hydrolase activity, zinc ion binding, ATP binding, helicase activity, DNA topoisomerase activity, DNA binding, nucleotide binding, DNA topoisomerase (ATP-hydrolyzing) activity, ATP-dependent helicase activity, DNA topoisomerase type I activity, nucleic acid binding
Biological process: DNA unwinding during replication, DNA topological change, DNA metabolic process
Cellular component: chromosome
17. 2on7D [pdb]
LRMSD: 1.66973519325p-value: 0.00103980663698
Matching residues: ARG129 PHE132 GLU162 TYR178 LYS187 ARG189
EC class: GO terms:
18. 1qh6B [pdb]
LRMSD: 1.67128717899p-value: 0.0010398812592
Matching residues: PHE48 ARG49 TYR70 SER146 ARG148 LYS151
EC class: 0.0.0.0
GO terms:
Molecular function: hydrolase activity, hydrolase activity, acting on glycosyl bonds, endo-1,4-beta-xylanase activity, hydrolase activity, hydrolyzing O-glycosyl compounds
Biological process: metabolic process, xylan catabolic process, carbohydrate metabolic process
19. 1wmiA [pdb]
LRMSD: 1.67346453667p-value: 0.00108770816587
Matching residues: ARG4 LYS6 GLU34 ARG40 PHE43 TYR57
EC class: 0.0.0.0
GO terms:
