The LabelHash Server

Top 100 matches

For each match you can click on the "[pdb]" link to download a PDB file with the matching chain aligned with the motif.
Download a zip file with PDB files for all the matches and the motif itself.

PDB ID	LRMSD / p-value	Matching Residues	EC	Gene Ontology annotations
1jg2A	[pdb]	0.0375226 2.01664e-05	97^GLU 99^GLY 101^GLY 160^ASP 179^LEU 183^GLY	2.1.1.77	cytoplasm	protein modification process protein repair	transferase activity methyltransferase activity protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
2yxeB	[pdb]	0.194319 7.0545e-05	83^GLU 85^GLY 87^GLY 148^ASP 167^LEU 171^GLY	2.1.1.77	cytoplasm	protein repair protein modification process	transferase activity methyltransferase activity protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
1vbfC	[pdb]	0.288207 0.00015585	76^GLU 78^GLY 80^GLY 136^ASP 155^LEU 159^GLY	0.0.0.0		methyltransferase activity transferase activity protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	protein modification process
3evzA	[pdb]	0.305032 0.000176067	86^GLU 88^GLY 90^GLY 150^ASP 194^LEU 198^GLY	0.0.0.0			methyltransferase activity
1r18A	[pdb]	0.32243 0.000198361	84^ASP 86^GLY 88^GLY 159^ASN 178^LEU 182^GLY	2.1.1.77	cytoplasm	protein modification process	transferase activity methyltransferase activity protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
1o54A	[pdb]	0.325322 0.000210205	106^ASP 108^GLY 110^GLY 171^ASP 191^LEU 195^GLY	0.0.0.0	nucleus	tRNA (adenine-N1-)-methyltransferase activity	tRNA methylation
1dl5B	[pdb]	0.400939 0.000361007	81^GLU 83^GLY 85^GLY 146^ASP 165^LEU 169^GLY	2.1.1.77	cytoplasm	protein modification process protein repair	transferase activity methyltransferase activity protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
3e23A	[pdb]	0.400981 0.000361008	49^GLU 51^GLY 53^GLY 104^ASP 131^LEU 135^GLY	0.0.0.0
1i1nA	[pdb]	0.41593 0.000402891	83^ASP 85^GLY 87^GLY 153^ASP 172^LEU 176^GLY	2.1.1.77	cytoplasm cellular_component endoplasmic reticulum	protein repair protein amino acid methylation protein modification process	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity transferase activity methyltransferase activity identical protein binding protein binding
3bgvA	[pdb]	0.442084 0.000507471	39^ASP 41^GLY 43^GLY 115^ASP 144^LEU 148^GLY	2.1.1.56	mRNA (guanine-N7-)-methyltransferase activity RNA binding transferase activity methyltransferase activity	mRNA capping mRNA processing	nucleus nucleoplasm
1i9gA	[pdb]	0.453106 0.000572108	105^GLU 107^GLY 109^GLY 173^ASP 193^LEU 197^GLY	0.0.0.0	nucleus	tRNA methylation	transferase activity methyltransferase activity tRNA (adenine-N1-)-methyltransferase activity
3busA	[pdb]	0.454157 0.000572144	67^ASP 69^GLY 71^GLY 131^ASP 156^LEU 160^GLY	0.0.0.0		metabolic process metabolic process	transferase activity methyltransferase activity transferase activity methyltransferase activity
1zx0B	[pdb]	0.483981 0.000720802	66^GLU 68^GLY 70^GLY 130^ASP 160^LEU 164^GLY	2.1.1.2	cytosol	spermatogenesis organ morphogenesis regulation of multicellular organism growth creatine metabolic process muscle contraction creatine biosynthetic process	transferase activity methyltransferase activity guanidinoacetate N-methyltransferase activity
2pbfA	[pdb]	0.485098 0.00072085	86^ASP 88^GLY 90^GLY 164^ASP 183^LEU 187^GLY	0.0.0.0		protein modification process	transferase activity methyltransferase activity protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
3g5lA	[pdb]	0.488699 0.000763108	48^ASP 50^GLY 52^GLY 108^ASN 133^LEU 137^GLY	0.0.0.0		metabolic process	methyltransferase activity
2vdvF	[pdb]	0.490381 0.000763183	101^ASP 103^GLY 105^GLY 176^SER 209^LEU 213^GLY	2.1.1.33	nucleus	tRNA processing ribosome biogenesis tRNA methylation tRNA modification	transferase activity methyltransferase activity tRNA (guanine-N7-)-methyltransferase activity protein binding tRNA binding RNA binding
3dtnB	[pdb]	0.4907 0.000763197	48^ASP 50^GLY 52^GLY 109^ASP 136^LEU 140^GLY	0.0.0.0
1ufkA	[pdb]	0.503536 0.000854098	126^ASP 128^GLY 130^GLY 186^ASP 208^LEU 212^GLY		cytoplasm	protein amino acid methylation	transferase activity methyltransferase activity protein methyltransferase activity
3bkwA	[pdb]	0.504565 0.000854147	48^ASP 50^GLY 52^GLY 108^ASP 133^LEU 137^GLY	0.0.0.0		metabolic process	methyltransferase activity
3e05D	[pdb]	0.506869 0.000854259	254^ASP 256^GLY 258^GLY 318^ASP 340^LEU 344^GLY	0.0.0.0		cobalamin biosynthetic process metabolic process	transferase activity methyltransferase activity precorrin-6Y C5,15-methyltransferase (decarboxylating) activity protein methyltransferase activity
3e7pA	[pdb]	0.516843 0.000952615	53^ASP 55^GLY 57^GLY 117^ASP 141^LEU 145^GLY	0.0.0.0		metabolic process	methyltransferase activity
1kxzC	[pdb]	0.518064 0.000952678	39^ASP 41^GLY 43^GLY 102^ASP 124^LEU 128^GLY	0.0.0.0		cobalamin biosynthetic process metabolic process corrin biosynthetic process	transferase activity methyltransferase activity protein methyltransferase activity cobalamin-transporting ATPase activity
1xclA	[pdb]	0.525153 0.0010045	65^GLU 67^GLY 69^GLY 129^ASP 159^LEU 163^GLY	2.1.1.2		spermatogenesis organ morphogenesis regulation of multicellular organism growth S-adenosylmethionine metabolic process S-adenosylhomocysteine metabolic process creatine biosynthetic process	transferase activity methyltransferase activity guanidinoacetate N-methyltransferase activity protein homodimerization activity S-adenosylmethionine-dependent methyltransferase activity
2o57D	[pdb]	0.527976 0.00100465	88^ASP 90^GLY 92^GLY 152^ASP 177^LEU 181^GLY
3dmfA	[pdb]	0.540521 0.00111249	239^ASP 241^GLY 243^GLY 300^ASP 330^LEU 334^GLY	0.0.0.0		methylation rRNA modification	transferase activity methyltransferase activity rRNA methyltransferase activity nucleic acid binding rRNA (adenine-N6,N6-)-dimethyltransferase activity
1f3lA	[pdb]	0.543161 0.00111264	258^ASP 260^GLY 262^GLY 321^ASP 349^LEU 353^GLY	0.0.0.0	cytoplasm intracellular cytosol ribosome	metal ion binding transferase activity zinc ion binding methyltransferase activity protein-arginine omega-N asymmetric methyltransferase activity protein-arginine N-methyltransferase activity S-adenosylmethionine-dependent methyltransferase activity protein binding	peptidyl-arginine methylation to asymmetrical-dimethyl arginine metabolic process protein amino acid methylation
2b25A	[pdb]	0.55523 0.00122494	109^GLU 111^GLY 113^GLY 187^ASP 207^LEU 211^GLY	2.1.1.36	nucleus	tRNA processing tRNA methylation	transferase activity methyltransferase activity tRNA (adenine-N1-)-methyltransferase activity
3g5tA	[pdb]	0.563227 0.00128238	42^ASP 44^GLY 46^GLY 115^ASP 139^LEU 143^GLY	2.1.1.145		cytoplasm cytosol	transferase activity methyltransferase activity trans-aconitate 3-methyltransferase activity
1dusA	[pdb]	0.564208 0.00128243	61^ASP 63^GLY 65^GLY 124^ASN 150^LEU 154^GLY				transferase activity methyltransferase activity
2e58B	[pdb]	0.574288 0.00139821	102^ASP 104^GLY 106^GLY 188^ASP 216^ILE 220^GLY	0.0.0.0
1xxlB	[pdb]	0.577431 0.00139839	18^ASP 20^GLY 22^GLY 80^ASP 105^LEU 109^GLY			metabolic process	methyltransferase activity transferase activity
2nyuB	[pdb]	0.580384 0.00145637	28^ASP 30^GLY 32^ALA 99^ASP 135^LEU 139^GLY		nucleus nucleolus	rRNA processing rRNA methylation methylation	transferase activity methyltransferase activity RNA methyltransferase activity nucleic acid binding
1oriA	[pdb]	0.584508 0.00145661	76^ASP 78^GLY 80^GLY 139^ASP 167^LEU 171^GLY	0.0.0.0	nucleus protein complex	peptidyl-arginine methylation to asymmetrical-dimethyl arginine protein amino acid methylation peptidyl-arginine methylation peptidyl-arginine omega-N-methylation	transferase activity methyltransferase activity protein-arginine omega-N asymmetric methyltransferase activity snoRNP binding S-adenosylmethionine-dependent methyltransferase activity protein methyltransferase activity protein-arginine omega-N monomethyltransferase activity histone-arginine N-methyltransferase activity [cytochrome c]-arginine N-methyltransferase activity protein binding
1p91A	[pdb]	0.58947 0.00151486	91^ASP 93^GLY 95^GLY 150^ASP 168^VAL 172^GLY	2.1.1.51		rRNA processing metabolic process	transferase activity methyltransferase activity rRNA (guanine-N1-)-methyltransferase activity protein binding
2a14A	[pdb]	0.592277 0.00151502	61^ASP 63^GLY 65^GLY 158^ASP 187^LEU 191^GLY	2.1.1.49		cytoplasm	transferase activity methyltransferase activity amine N-methyltransferase activity
1g6q1	[pdb]	0.5942 0.00151514	64^ASP 66^GLY 68^GLY 127^ASP 155^LEU 159^GLY		nucleus cytoplasm	ribosome biogenesis peptidyl-arginine modification mRNA export from nucleus protein amino acid methylation	transferase activity methyltransferase activity protein-arginine N-methyltransferase activity protein methyltransferase activity identical protein binding protein binding
2pjdA	[pdb]	0.599546 0.00157339	202^ASP 204^GLY 206^GLY 263^ASP 293^LEU 297^GLY	2.1.1.52	cytoplasm	nucleic acid binding transferase activity methyltransferase activity magnesium ion binding rRNA (guanine-N2-)-methyltransferase activity	rRNA processing methylation rRNA methylation
2fytA	[pdb]	0.608351 0.00163168	278^ASP 280^GLY 282^GLY 341^ASP 369^LEU 373^GLY	0.0.0.0	cytosol ribosome cytoplasm intracellular	protein amino acid methylation biological_process metabolic process	protein binding protein-arginine N-methyltransferase activity metal ion binding transferase activity zinc ion binding methyltransferase activity
1nkvC	[pdb]	0.609547 0.00168925	42^ASP 44^GLY 46^GLY 105^ASP 130^LEU 134^GLY		membrane integral to membrane	metabolic process	methyltransferase activity protein binding
2zfuB	[pdb]	0.614461 0.00168953	314^ASP 316^GLY 318^GLY 358^ASP 382^LEU 386^GLY			nucleolus nucleus	protein binding
3e8sA	[pdb]	0.623211 0.00180363	57^ASP 59^GLY 61^GLY 117^ASP 141^LEU 145^GLY	0.0.0.0
2gs9B	[pdb]	0.625189 0.00180374	43^GLU 45^GLY 47^GLY 98^ASP 123^LEU 127^GLY	0.0.0.0		metabolic process	methyltransferase activity
1l1eB	[pdb]	0.640994 0.00191551	70^ASP 72^GLY 74^GLY 131^ASP 158^LEU 162^GLY	0.0.0.0		lipid biosynthetic process	transferase activity cyclopropane-fatty-acyl-phospholipid synthase activity
2v74F	[pdb]	0.650589 0.00197014	191^ASP 193^GLY 195^GLY 253^ASP 280^LEU 284^GLY	2.1.1.125	chromatin modification regulation of transcription DNA-dependent transcription histone methylation protein amino acid methylation steroid hormone receptor signaling pathway regulation of transcription	cytoplasm nucleus	transferase activity methyltransferase activity histone-arginine N-methyltransferase activity protein methyltransferase activity protein binding transcription coactivator activity
1ri4A	[pdb]	0.658 0.0020236	70^ASP 72^GLY 74^GLY 135^ASP 164^LEU 168^GLY	2.1.1.56	mRNA processing mRNA capping	nucleus	transferase activity methyltransferase activity RNA binding mRNA (guanine-N7-)-methyltransferase activity
3ccfB	[pdb]	0.662325 0.00207575	44^ASP 46^GLY 48^GLY 100^ASP 125^LEU 129^GLY	0.0.0.0		metabolic process	transferase activity methyltransferase activity trans-aconitate 2-methyltransferase activity
1xtpA	[pdb]	0.663705 0.00207582	99^ASP 101^GLY 103^GLY 160^ASP 187^LEU 191^GLY	0.0.0.0			methyltransferase activity
3dlcA	[pdb]	0.665276 0.0020759	48^ASP 50^GLY 52^GLY 112^ASP 137^LEU 141^GLY	0.0.0.0		metabolic process	transferase activity methyltransferase activity
2iipA	[pdb]	0.671293 0.00212691	61^ASP 63^GLY 65^GLY 158^ASP 187^LEU 191^GLY	2.1.1.1		cytoplasm	transferase activity methyltransferase activity nicotinamide N-methyltransferase activity
1vlmA	[pdb]	0.672223 0.00212695	41^GLU 43^GLY 45^GLY 92^ASP 117^LEU 121^GLY	0.0.0.0		metabolic process	methyltransferase activity
2p35A	[pdb]	0.686923 0.00227217	36^ASP 38^GLY 40^GLY 94^ASP 119^LEU 123^GLY	2.1.1.144	cytoplasm	metabolic process	transferase activity methyltransferase activity trans-aconitate 2-methyltransferase activity
2gh1A	[pdb]	0.702756 0.00236471	45^ASP 47^GLY 49^GLY 108^ASP 133^VAL 137^GLY	0.0.0.0			transferase activity methyltransferase activity
2ex4B	[pdb]	0.705766 0.00236484	68^ASP 70^GLY 72^GLY 131^ASP 158^LEU 162^GLY				transferase activity methyltransferase activity protein binding
2gq8A	[pdb]	0.71485 0.00240945	185^GLY 189^ASN 215^ASP 216^GLU 218^VAL 242^GLY	0.0.0.0		metabolic process	oxidoreductase activity FMN binding catalytic activity
1kpgB	[pdb]	0.718607 0.00245246	70^ASP 72^GLY 74^GLY 131^ASP 158^LEU 162^GLY	2.1.1.79	cytoplasm cytoplasm	lipid biosynthetic process lipid biosynthetic process	transferase activity methyltransferase activity cyclopropane-fatty-acyl-phospholipid synthase activity transferase activity methyltransferase activity cyclopropane-fatty-acyl-phospholipid synthase activity
1tw2B	[pdb]	0.719381 0.00245249	184^ASP 186^GLY 188^GLY 246^ASP 273^LEU 277^GLY	0.0.0.0		antibiotic biosynthetic process	transferase activity methyltransferase activity ATP binding nucleotide binding O-methyltransferase activity
3d2lC	[pdb]	0.743065 0.00257395	38^ASP 40^GLY 42^GLY 97^ASP 126^LEU 130^GLY	0.0.0.0
1tpyA	[pdb]	0.757988 0.00264845	70^ASP 72^GLY 74^GLY 131^ASP 158^LEU 162^GLY	0.0.0.0		lipid biosynthetic process	transferase activity methyltransferase activity cyclopropane-fatty-acyl-phospholipid synthase activity
1z45A	[pdb]	0.762352 0.00268373	99^GLU 100^SER 103^ILE 111^ASN 114^GLY 118^LEU	5.1.3.2, 5.1.3.3	galactose metabolic process carbohydrate metabolic process galactose catabolic process via UDP-galactose cellular metabolic process metabolic process	isomerase activity catalytic activity aldose 1-epimerase activity UDP-glucose 4-epimerase activity coenzyme binding carbohydrate binding binding	soluble fraction
3egeA	[pdb]	0.776278 0.00275105	39^ASP 41^GLY 43^GLY 95^ASP 120^ILE 123^GLY	0.0.0.0		metabolic process	methyltransferase activity
2i62B	[pdb]	0.778717 0.00275113	62^ASP 64^GLY 66^GLY 159^ASP 188^LEU 192^GLY	2.1.1.1		cytoplasm	transferase activity methyltransferase activity nicotinamide N-methyltransferase activity
1xdsA	[pdb]	0.781717 0.00278311	188^ASP 190^GLY 192^GLY 250^ASP 277^LEU 281^GLY	0.0.0.0			O-methyltransferase activity
1yzhA	[pdb]	0.795369 0.00284483	44^GLU 46^GLY 48^GLY 110^ASP 143^LEU 147^GLY	2.1.1.33		tRNA processing tRNA modification	transferase activity methyltransferase activity tRNA (guanine-N7-)-methyltransferase activity
2p8jA	[pdb]	0.821437 0.00293405	28^ASP 30^GLY 32^GLY 90^SER 117^LEU 121^GLY	0.0.0.0		metabolic process	transferase activity methyltransferase activity
3bjiB	[pdb]	0.84102 0.0030218	377^ASN 378^GLU 380^LEU 542^GLN 543^GLY 553^ALA		T cell activation positive regulation of lamellipodium assembly cell adhesion negative regulation of receptor-mediated endocytosis ruffle organization lamellipodium assembly actin filament polymerization positive regulation of Rho protein signal transduction response to wounding anatomical structure morphogenesis intracellular signaling cascade inflammatory response cell motion small GTPase mediated signal transduction localization within membrane regulation of hydrogen peroxide metabolic process regulation of respiratory burst regulation of Rho protein signal transduction intracellular signaling cascade positive regulation of cell adhesion regulation of GTPase activity integrin-mediated signaling pathway immune response phagocytosis	melanosome plasma membrane membrane cytosol intracellular cytoplasm intracellular intracellular membrane-bounded organelle	protein binding GTPase activity GTP binding nucleotide binding GTP-dependent protein binding enzyme binding protein binding metal ion binding diacylglycerol binding zinc ion binding guanyl-nucleotide exchange factor activity transcription factor activity Rho guanyl-nucleotide exchange factor activity Rac guanyl-nucleotide exchange factor activity
2vrwB	[pdb]	0.865403 0.00314583	377^ASN 378^GLU 380^LEU 542^GLN 543^GLY 553^ALA		intracellular melanosome plasma membrane membrane cytosol intracellular	metal ion binding diacylglycerol binding zinc ion binding guanyl-nucleotide exchange factor activity Rac guanyl-nucleotide exchange factor activity protein binding Rho guanyl-nucleotide exchange factor activity protein binding GTPase activity GTP binding nucleotide binding GTP-dependent protein binding enzyme binding	positive regulation of lamellipodium assembly cell adhesion positive regulation of cell adhesion regulation of GTPase activity T cell activation T cell differentiation intracellular signaling cascade integrin-mediated signaling pathway immune response phagocytosis regulation of Rho protein signal transduction negative regulation of receptor-mediated endocytosis ruffle organization lamellipodium assembly actin filament polymerization positive regulation of Rho protein signal transduction response to wounding anatomical structure morphogenesis intracellular signaling cascade inflammatory response cell motion small GTPase mediated signal transduction localization within membrane regulation of hydrogen peroxide metabolic process regulation of respiratory burst
2uvfB	[pdb]	0.872998 0.00318001	217^LEU 219^GLY 272^ASN 301^VAL 303^GLU 304^ASP	0.0.0.0		carbohydrate metabolic process	polygalacturonase activity
2d80A	[pdb]	0.874269 0.00318006	38^LEU 40^SER 42^GLY 212^ALA 226^GLY 282^GLN	0.0.0.0	carbohydrate metabolic process	extracellular region	hydrolase activity cellulose binding hydrolase activity hydrolyzing O-glycosyl compounds
2oxaA	[pdb]	0.899368 0.00329572	80^GLY 114^GLY 297^ASP 316^LEU 319^ASN 323^ASP	0.0.0.0		peptidase activity serine-type endopeptidase activity serine-type peptidase activity hydrolase activity	proteolysis
3d1rA	[pdb]	0.899577 0.00329573	107^GLY 126^GLY 129^ALA 225^ASP 277^ASN 279^ILE	3.1.3.11	carbohydrate metabolic process glycerol metabolic process	cytoplasm	manganese ion binding hydrolase activity fructose 1,6-bisphosphate 1-phosphatase activity
2onyA	[pdb]	0.904971 0.00333981	77^ASP 79^GLY 81^GLY 176^ASP 205^LEU 209^GLY	2.1.1.28		catecholamine biosynthetic process	transferase activity methyltransferase activity phenylethanolamine N-methyltransferase activity
3cggA	[pdb]	0.926177 0.00349537	51^ASP 53^GLY 55^GLY 108^ASP 136^LEU 140^GLY	0.0.0.0			transferase activity methyltransferase activity transferase activity methyltransferase activity
1fzdB	[pdb]	0.927447 0.00349544	734^LEU 762^ASN 763^ASN 797^ASN 800^GLY 821^GLY		blood coagulation protein polymerization platelet activation signal transduction tissue regeneration response to calcium ion	extracellular region platelet alpha granule lumen plasma membrane fibrinogen complex platelet alpha granule external side of plasma membrane extracellular space	protein binding protein binding bridging receptor binding eukaryotic cell surface binding
2ft3F	[pdb]	0.92954 0.00355373	63^ASN 85^LEU 88^ASN 132^ASP 155^GLY 182^ALA		peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan	protein binding glycosaminoglycan binding extracellular matrix binding	proteinaceous extracellular matrix extracellular region transport vesicle extracellular matrix sarcolemma intracellular part
1kywA	[pdb]	0.93091 0.00355382	206^ASP 208^GLY 210^GLY 260^ASP 287^LEU 291^GLY	2.1.1.68		lignin biosynthetic process	transferase activity methyltransferase activity caffeate O-methyltransferase activity protein dimerization activity O-methyltransferase activity
2fgeA	[pdb]	0.937197 0.00361503	605^GLY 609^LEU 670^GLN 740^GLY 741^ILE 743^SER		apoplast chloroplast envelope chloroplast stroma chloroplast mitochondrion mitochondrial matrix plastid	peptidase activity metalloendopeptidase activity metal ion binding hydrolase activity zinc ion binding metallopeptidase activity magnesium ion binding catalytic activity	protein maturation by peptide bond cleavage response to cadmium ion proteolysis
2qm1D	[pdb]	0.956652 0.00375547	75^SER 83^VAL 85^GLY 114^ASP 307^ALA 308^GLY	0.0.0.0	cytoplasm	glycolysis	kinase activity glucokinase activity
1iyxB	[pdb]	0.965769 0.00392272	111^LEU 313^GLY 314^ASP 316^LEU 342^GLN 344^GLY	4.2.1.11	cell surface cytoplasm extracellular region phosphopyruvate hydratase complex	glycolysis	metal ion binding lyase activity magnesium ion binding phosphopyruvate hydratase activity
1bvoA	[pdb]	0.966657 0.00392281	73^GLY 148^GLY 150^GLN 156^ASP 159^GLU 161^LEU	0.0.0.0	nucleus	protein binding transcription factor activity	regulation of alternative nuclear mRNA splicing via spliceosome plasmatocyte differentiation regulation of transcription regulation of transcription DNA-dependent
1rp4A	[pdb]	0.971583 0.00392328	85^ASP 126^GLY 175^ASN 177^VAL 190^GLY 353^ASP		cellular response to heat oxidation reduction electron transport chain transport protein thiol-disulfide exchange protein folding	endoplasmic reticulum membrane membrane endoplasmic reticulum	oxidoreductase activity thiol oxidase activity electron carrier activity FAD binding oxidoreductase activity acting on sulfur group of donors disulfide as acceptor protein binding
2qyoB	[pdb]	0.974117 0.00401874	199^ASP 201^GLY 203^GLY 253^ASP 280^VAL 287^GLY	0.0.0.0			protein dimerization activity O-methyltransferase activity methyltransferase activity
2fgiB	[pdb]	0.976823 0.00401902	567^GLY 568^ASN 631^VAL 641^ASP 643^GLY 645^ALA	2.7.10.1	membrane fraction integral to membrane membrane plasma membrane integral to plasma membrane	protein amino acid phosphorylation cell growth fibroblast growth factor receptor signaling pathway skeletal system development MAPKKK cascade	protein binding fibroblast growth factor receptor activity heparin binding ATP binding protein tyrosine kinase activity transferase activity kinase activity receptor activity nucleotide binding transmembrane receptor protein tyrosine kinase activity protein kinase activity
1qmiD	[pdb]	0.979245 0.00412345	97^GLY 124^GLY 126^ASP 195^GLU 196^VAL 238^SER	6.5.1.4	RNA processing	cytoplasm	nucleotide binding ATP binding ligase activity RNA-3'-phosphate cyclase activity ligase activity forming phosphoric ester bonds catalytic activity
2nm0A	[pdb]	0.982153 0.00412379	10^GLY 19^ALA 75^ASN 96^VAL 139^ASN 143^SER	0.0.0.0		NAD or NADH binding oxidoreductase activity binding 3-oxoacyl-[acyl-carrier-protein] reductase activity catalytic activity	oxidation reduction metabolic process fatty acid biosynthetic process
3f6tA	[pdb]	0.988112 0.00423848	35^LEU 464^LEU 466^ASN 467^ASN 470^GLN 490^GLY	0.0.0.0		biosynthetic process	transferase activity transaminase activity L-aspartate:2-oxoglutarate aminotransferase activity pyridoxal phosphate binding transferase activity transferring nitrogenous groups catalytic activity
1fp1D	[pdb]	0.988654 0.00423855	215^ASP 217^GLY 219^GLY 269^ASP 296^LEU 300^GLY	0.0.0.0			transferase activity methyltransferase activity protein dimerization activity O-methyltransferase activity
2iouD	[pdb]	0.990434 0.00423877	163^ALA 164^GLY 167^ARG 192^GLN 371^ARG 373^LEU	0.0.0.0	cell outer membrane membrane plasma membrane outer membrane	pathogenesis cell adhesion	protein binding
1jbqD	[pdb]	0.995411 0.00436411	149^ASN 151^GLY 154^LEU 303^VAL 348^GLY 349^SER	4.2.1.22	L-serine metabolic process L-serine catabolic process L-cysteine catabolic process homocysteine catabolic process regulation of JUN kinase activity homocysteine metabolic process hydrogen sulfide biosynthetic process cysteine biosynthetic process cellular amino acid biosynthetic process cysteine metabolic process cysteine biosynthetic process via cystathionine metabolic process cysteine biosynthetic process from serine	intracellular membrane-bounded organelle nucleolus cytosol cytoplasm nucleus	protein binding enzyme binding heme binding ubiquitin protein ligase binding identical protein binding protein homodimerization activity metal ion binding lyase activity iron ion binding catalytic activity cystathionine beta-synthase activity pyridoxal phosphate binding
2p4sB	[pdb]	0.995681 0.00436415	213^ASP 271^GLU 272^LEU 297^LEU 298^GLY 300^ASP	0.0.0.0		nucleoside metabolic process nucleobase nucleoside nucleotide and nucleic acid metabolic process	transferase activity transferring glycosyl groups transferase activity purine-nucleoside phosphorylase activity transferase activity transferring pentosyl groups catalytic activity
2be1A	[pdb]	0.997725 0.00436443	127^ASP 130^GLY 140^GLY 142^ILE 154^LEU 348^SER	2.7.11.1	endoplasmic reticulum endoplasmic reticulum membrane integral to membrane membrane nucleus	mRNA processing response to unfolded protein regulation of transcription DNA-dependent transcription fungal-type cell wall organization endoplasmic reticulum unfolded protein response protein amino acid phosphorylation inositol metabolic process regulation of transcription	magnesium ion binding metal ion binding hydrolase activity transferase activity kinase activity ATP binding protein serine/threonine kinase activity catalytic activity nucleotide binding unfolded protein binding protein homodimerization activity endoribonuclease activity endoribonuclease activity producing 5'-phosphomonoesters protein kinase activity identical protein binding
1zgaA	[pdb]	1.00233 0.00450141	205^ASP 207^GLY 209^GLY 259^ASP 286^ILE 293^GLY	0.0.0.0			transferase activity methyltransferase activity protein dimerization activity O-methyltransferase activity
1kcwA	[pdb]	1.01084 0.00465164	565^VAL 631^GLY 632^ASN 902^LEU 969^GLY 971^GLU	1.16.3.1	extracellular region extracellular space anchored to plasma membrane	metal ion binding oxidoreductase activity copper ion binding ferroxidase activity	oxidation reduction copper ion transport ion transport transport cellular iron ion homeostasis response to nutrient aging
1qrpE	[pdb]	1.01174 0.00465179	223^GLY 240^ASN 244^ASP 246^VAL 287^GLN 298^LEU	3.4.23.1	aspartic-type endopeptidase activity hydrolase activity peptidase activity	cellular_component extracellular region	digestion proteolysis
1ru4A	[pdb]	1.01225 0.00465188	275^GLY 281^GLY 292^GLY 294^VAL 299^ASP 317^ASN	4.2.2.2		extracellular region extracellular region	lyase activity calcium ion binding pectate lyase activity lyase activity calcium ion binding pectate lyase activity
1qhnA	[pdb]	1.01395 0.00465215	52^GLY 53^GLY 55^GLU 59^ASP 137^VAL 139^GLY	0.0.0.0		response to antibiotic	transferase activity kinase activity ATP binding nucleotide binding
3fihB	[pdb]	1.01421 0.0046522	70^G 75^C 164^GLY 193^GLY 194^PHE 195^LEU		membrane ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome small ribosomal subunit intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome small ribosomal subunit intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome small ribosomal subunit intracellular ribonucleoprotein complex ribosome small ribosomal subunit intracellular ribonucleoprotein complex ribosome intracellular plasma membrane cytoplasm membrane intracellular ribonucleoprotein complex ribosome small ribosomal subunit intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome small ribosomal subunit intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome small ribosomal subunit intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome small ribosomal subunit intracellular ribonucleoprotein complex ribosome intracellular	rRNA binding RNA binding structural constituent of ribosome structural constituent of ribosome rRNA binding RNA binding tRNA binding structural constituent of ribosome rRNA binding RNA binding structural constituent of ribosome rRNA binding RNA binding structural constituent of ribosome protein binding rRNA binding RNA binding structural constituent of ribosome rRNA binding RNA binding structural constituent of ribosome hydrolase activity endonuclease activity nuclease activity structural constituent of ribosome rRNA binding RNA binding structural constituent of ribosome rRNA binding RNA binding structural constituent of ribosome protein binding rRNA binding RNA binding tRNA binding structural constituent of ribosome rRNA binding RNA binding tRNA binding structural constituent of ribosome nucleic acid binding GTP binding translation elongation factor activity nucleotide binding GTPase activity protein binding structural constituent of ribosome RNA binding protein binding tRNA binding rRNA binding RNA binding structural constituent of ribosome rRNA binding RNA binding structural constituent of ribosome protein binding RNA binding tRNA binding structural constituent of ribosome protein binding structural constituent of ribosome protein binding structural constituent of ribosome rRNA binding rRNA binding RNA binding structural constituent of ribosome rRNA binding RNA binding tRNA binding structural constituent of ribosome rRNA binding RNA binding structural constituent of ribosome	translation translation response to antibiotic translation response to antibiotic translation translation translation translation translation translation response to antibiotic regulation of translation regulation of transcription DNA-dependent transcription termination transcription translation translation translation response to antibiotic translation translational elongation translation regulation of translation translation response to antibiotic translation translation translation translation translation translation translation regulation of transcription
1fwxD	[pdb]	1.02062 0.00481581	91^ASP 92^GLY 330^GLY 332^GLY 386^ASP 446^ILE	1.7.99.6	metal ion binding chloride ion binding oxidoreductase activity copper ion binding nitrous-oxide reductase activity cytochrome-c oxidase activity calcium ion binding	oxidation reduction	periplasmic space membrane
3b89A	[pdb]	1.02151 0.004993	90^GLU 92^ASP 94^LEU 113^GLY 115^ASN 136^LEU	0.0.0.0		methyltransferase activity rRNA methyltransferase activity	response to antibiotic
1qlbA	[pdb]	1.02179 0.00499306	76^PRO 78^VAL 405^LEU 557^ASP 604^ILE 606^ASN	1.3.99.1	mitochondrial respiratory chain mitochondrial respiratory chain respiratory chain respiratory chain respiratory chain plasma membrane integral to membrane membrane mitochondrial respiratory chain	oxidation reduction electron transport chain transport oxidation reduction electron transport chain transport tricarboxylic acid cycle electron transport chain transport tricarboxylic acid cycle	oxidoreductase activity succinate dehydrogenase activity FAD binding oxidoreductase activity acting on the CH-CH group of donors electron carrier activity 4 iron 4 sulfur cluster binding 3 iron 4 sulfur cluster binding 2 iron 2 sulfur cluster binding iron-sulfur cluster binding metal ion binding oxidoreductase activity iron ion binding succinate dehydrogenase activity electron carrier activity metal ion binding iron ion binding
2rhpA	[pdb]	1.02483 0.00499365	868^GLY 947^VAL 955^SER 956^GLU 1004^GLU 1148^GLY		cell adhesion	heparin binding protein binding calcium ion binding structural molecule activity	platelet alpha granule lumen extracellular region

PDB ID

LRMSD /
p-value

Matching Residues

Gene Ontology annotations

Biological Process

Cellular Component

Molecular Function

1jg2A

[pdb]

0.0375226
2.01664e-05

97^GLU 99^GLY 101^GLY 160^ASP 179^LEU 183^GLY

2.1.1.77

cytoplasm

protein modification process
protein repair

transferase activity
methyltransferase activity
protein-L-isoaspartate (D-aspartate) O-methyltransferase activity

2yxeB

[pdb]

0.194319
7.0545e-05

83^GLU 85^GLY 87^GLY 148^ASP 167^LEU 171^GLY

2.1.1.77

cytoplasm

protein repair
protein modification process

transferase activity
methyltransferase activity
protein-L-isoaspartate (D-aspartate) O-methyltransferase activity

1vbfC

[pdb]

0.288207
0.00015585

76^GLU 78^GLY 80^GLY 136^ASP 155^LEU 159^GLY

0.0.0.0

methyltransferase activity
transferase activity
protein-L-isoaspartate (D-aspartate) O-methyltransferase activity

protein modification process

3evzA

[pdb]

0.305032
0.000176067

86^GLU 88^GLY 90^GLY 150^ASP 194^LEU 198^GLY

0.0.0.0

methyltransferase activity

1r18A

[pdb]

0.32243
0.000198361

84^ASP 86^GLY 88^GLY 159^ASN 178^LEU 182^GLY

2.1.1.77

cytoplasm

protein modification process

transferase activity
methyltransferase activity
protein-L-isoaspartate (D-aspartate) O-methyltransferase activity

1o54A

[pdb]

0.325322
0.000210205

106^ASP 108^GLY 110^GLY 171^ASP 191^LEU 195^GLY

0.0.0.0

nucleus

tRNA (adenine-N1-)-methyltransferase activity

tRNA methylation

1dl5B

[pdb]

0.400939
0.000361007

81^GLU 83^GLY 85^GLY 146^ASP 165^LEU 169^GLY

2.1.1.77

cytoplasm

protein modification process
protein repair

transferase activity
methyltransferase activity
protein-L-isoaspartate (D-aspartate) O-methyltransferase activity

3e23A

[pdb]

0.400981
0.000361008

49^GLU 51^GLY 53^GLY 104^ASP 131^LEU 135^GLY

0.0.0.0

1i1nA

[pdb]

0.41593
0.000402891

83^ASP 85^GLY 87^GLY 153^ASP 172^LEU 176^GLY

2.1.1.77

cytoplasm
cellular_component
endoplasmic reticulum

protein repair
protein amino acid methylation
protein modification process

protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
transferase activity
methyltransferase activity
identical protein binding
protein binding

3bgvA

[pdb]

0.442084
0.000507471

39^ASP 41^GLY 43^GLY 115^ASP 144^LEU 148^GLY

2.1.1.56

mRNA (guanine-N7-)-methyltransferase activity
RNA binding
transferase activity
methyltransferase activity

mRNA capping
mRNA processing

nucleus
nucleoplasm

1i9gA

[pdb]

0.453106
0.000572108

105^GLU 107^GLY 109^GLY 173^ASP 193^LEU 197^GLY

0.0.0.0

nucleus

tRNA methylation

transferase activity
methyltransferase activity
tRNA (adenine-N1-)-methyltransferase activity

3busA

[pdb]

0.454157
0.000572144

67^ASP 69^GLY 71^GLY 131^ASP 156^LEU 160^GLY

0.0.0.0

metabolic process
metabolic process

transferase activity
methyltransferase activity
transferase activity
methyltransferase activity

1zx0B

[pdb]

0.483981
0.000720802

66^GLU 68^GLY 70^GLY 130^ASP 160^LEU 164^GLY

2.1.1.2

cytosol

spermatogenesis
organ morphogenesis
regulation of multicellular organism growth
creatine metabolic process
muscle contraction
creatine biosynthetic process

transferase activity
methyltransferase activity
guanidinoacetate N-methyltransferase activity

2pbfA

[pdb]

0.485098
0.00072085

86^ASP 88^GLY 90^GLY 164^ASP 183^LEU 187^GLY

0.0.0.0

protein modification process

transferase activity
methyltransferase activity
protein-L-isoaspartate (D-aspartate) O-methyltransferase activity

3g5lA

[pdb]

0.488699
0.000763108

48^ASP 50^GLY 52^GLY 108^ASN 133^LEU 137^GLY

0.0.0.0

metabolic process

methyltransferase activity

2vdvF

[pdb]

0.490381
0.000763183

101^ASP 103^GLY 105^GLY 176^SER 209^LEU 213^GLY

2.1.1.33

nucleus

tRNA processing
ribosome biogenesis
tRNA methylation
tRNA modification

transferase activity
methyltransferase activity
tRNA (guanine-N7-)-methyltransferase activity
protein binding
tRNA binding
RNA binding

3dtnB

[pdb]

0.4907
0.000763197

48^ASP 50^GLY 52^GLY 109^ASP 136^LEU 140^GLY

0.0.0.0

1ufkA

[pdb]

0.503536
0.000854098

126^ASP 128^GLY 130^GLY 186^ASP 208^LEU 212^GLY

cytoplasm

protein amino acid methylation

transferase activity
methyltransferase activity
protein methyltransferase activity

3bkwA

[pdb]

0.504565
0.000854147

48^ASP 50^GLY 52^GLY 108^ASP 133^LEU 137^GLY

0.0.0.0

metabolic process

methyltransferase activity

3e05D

[pdb]

0.506869
0.000854259

254^ASP 256^GLY 258^GLY 318^ASP 340^LEU 344^GLY

0.0.0.0

cobalamin biosynthetic process
metabolic process

transferase activity
methyltransferase activity
precorrin-6Y C5,15-methyltransferase (decarboxylating) activity
protein methyltransferase activity

3e7pA

[pdb]

0.516843
0.000952615

53^ASP 55^GLY 57^GLY 117^ASP 141^LEU 145^GLY

0.0.0.0

metabolic process

methyltransferase activity

1kxzC

[pdb]

0.518064
0.000952678

39^ASP 41^GLY 43^GLY 102^ASP 124^LEU 128^GLY

0.0.0.0

cobalamin biosynthetic process
metabolic process
corrin biosynthetic process

transferase activity
methyltransferase activity
protein methyltransferase activity
cobalamin-transporting ATPase activity

1xclA

[pdb]

0.525153
0.0010045

65^GLU 67^GLY 69^GLY 129^ASP 159^LEU 163^GLY

2.1.1.2

spermatogenesis
organ morphogenesis
regulation of multicellular organism growth
S-adenosylmethionine metabolic process
S-adenosylhomocysteine metabolic process
creatine biosynthetic process

transferase activity
methyltransferase activity
guanidinoacetate N-methyltransferase activity
protein homodimerization activity
S-adenosylmethionine-dependent methyltransferase activity

2o57D

[pdb]

0.527976
0.00100465

88^ASP 90^GLY 92^GLY 152^ASP 177^LEU 181^GLY

3dmfA

[pdb]

0.540521
0.00111249

239^ASP 241^GLY 243^GLY 300^ASP 330^LEU 334^GLY

0.0.0.0

methylation
rRNA modification

transferase activity
methyltransferase activity
rRNA methyltransferase activity
nucleic acid binding
rRNA (adenine-N6,N6-)-dimethyltransferase activity

1f3lA

[pdb]

0.543161
0.00111264

258^ASP 260^GLY 262^GLY 321^ASP 349^LEU 353^GLY

0.0.0.0

cytoplasm
intracellular
cytosol
ribosome

metal ion binding
transferase activity
zinc ion binding
methyltransferase activity
protein-arginine omega-N asymmetric methyltransferase activity
protein-arginine N-methyltransferase activity
S-adenosylmethionine-dependent methyltransferase activity
protein binding

peptidyl-arginine methylation
to asymmetrical-dimethyl arginine
metabolic process
protein amino acid methylation

2b25A

[pdb]

0.55523
0.00122494

109^GLU 111^GLY 113^GLY 187^ASP 207^LEU 211^GLY

2.1.1.36

nucleus

tRNA processing
tRNA methylation

transferase activity
methyltransferase activity
tRNA (adenine-N1-)-methyltransferase activity

3g5tA

[pdb]

0.563227
0.00128238

42^ASP 44^GLY 46^GLY 115^ASP 139^LEU 143^GLY

2.1.1.145

cytoplasm
cytosol

transferase activity
methyltransferase activity
trans-aconitate 3-methyltransferase activity

1dusA

[pdb]

0.564208
0.00128243

61^ASP 63^GLY 65^GLY 124^ASN 150^LEU 154^GLY

transferase activity
methyltransferase activity

2e58B

[pdb]

0.574288
0.00139821

102^ASP 104^GLY 106^GLY 188^ASP 216^ILE 220^GLY

0.0.0.0

1xxlB

[pdb]

0.577431
0.00139839

18^ASP 20^GLY 22^GLY 80^ASP 105^LEU 109^GLY

metabolic process

methyltransferase activity
transferase activity

2nyuB

[pdb]

0.580384
0.00145637

28^ASP 30^GLY 32^ALA 99^ASP 135^LEU 139^GLY

nucleus
nucleolus

rRNA processing
rRNA methylation
methylation

transferase activity
methyltransferase activity
RNA methyltransferase activity
nucleic acid binding

1oriA

[pdb]

0.584508
0.00145661

76^ASP 78^GLY 80^GLY 139^ASP 167^LEU 171^GLY

0.0.0.0

nucleus
protein complex

peptidyl-arginine methylation
to asymmetrical-dimethyl arginine
protein amino acid methylation
peptidyl-arginine methylation
peptidyl-arginine omega-N-methylation

transferase activity
methyltransferase activity
protein-arginine omega-N asymmetric methyltransferase activity
snoRNP binding
S-adenosylmethionine-dependent methyltransferase activity
protein methyltransferase activity
protein-arginine omega-N monomethyltransferase activity
histone-arginine N-methyltransferase activity
[cytochrome c]-arginine N-methyltransferase activity
protein binding

1p91A

[pdb]

0.58947
0.00151486

91^ASP 93^GLY 95^GLY 150^ASP 168^VAL 172^GLY

2.1.1.51

rRNA processing
metabolic process

transferase activity
methyltransferase activity
rRNA (guanine-N1-)-methyltransferase activity
protein binding

2a14A

[pdb]

0.592277
0.00151502

61^ASP 63^GLY 65^GLY 158^ASP 187^LEU 191^GLY

2.1.1.49

cytoplasm

transferase activity
methyltransferase activity
amine N-methyltransferase activity

1g6q1

[pdb]

0.5942
0.00151514

64^ASP 66^GLY 68^GLY 127^ASP 155^LEU 159^GLY

nucleus
cytoplasm

ribosome biogenesis
peptidyl-arginine modification
mRNA export from nucleus
protein amino acid methylation

transferase activity
methyltransferase activity
protein-arginine N-methyltransferase activity
protein methyltransferase activity
identical protein binding
protein binding

2pjdA

[pdb]

0.599546
0.00157339

202^ASP 204^GLY 206^GLY 263^ASP 293^LEU 297^GLY

2.1.1.52

cytoplasm

nucleic acid binding
transferase activity
methyltransferase activity
magnesium ion binding
rRNA (guanine-N2-)-methyltransferase activity

rRNA processing
methylation
rRNA methylation

2fytA

[pdb]

0.608351
0.00163168

278^ASP 280^GLY 282^GLY 341^ASP 369^LEU 373^GLY

0.0.0.0

cytosol
ribosome
cytoplasm
intracellular

protein amino acid methylation
biological_process
metabolic process

protein binding
protein-arginine N-methyltransferase activity
metal ion binding
transferase activity
zinc ion binding
methyltransferase activity

1nkvC

[pdb]

0.609547
0.00168925

42^ASP 44^GLY 46^GLY 105^ASP 130^LEU 134^GLY

membrane
integral to membrane

metabolic process

methyltransferase activity
protein binding

2zfuB

[pdb]

0.614461
0.00168953

314^ASP 316^GLY 318^GLY 358^ASP 382^LEU 386^GLY

nucleolus
nucleus

protein binding

3e8sA

[pdb]

0.623211
0.00180363

57^ASP 59^GLY 61^GLY 117^ASP 141^LEU 145^GLY

0.0.0.0

2gs9B

[pdb]

0.625189
0.00180374

43^GLU 45^GLY 47^GLY 98^ASP 123^LEU 127^GLY

0.0.0.0

metabolic process

methyltransferase activity

1l1eB

[pdb]

0.640994
0.00191551

70^ASP 72^GLY 74^GLY 131^ASP 158^LEU 162^GLY

0.0.0.0

lipid biosynthetic process

transferase activity
cyclopropane-fatty-acyl-phospholipid synthase activity

2v74F

[pdb]

0.650589
0.00197014

191^ASP 193^GLY 195^GLY 253^ASP 280^LEU 284^GLY

2.1.1.125

chromatin modification
regulation of transcription
DNA-dependent
transcription
histone methylation
protein amino acid methylation
steroid hormone receptor signaling pathway
regulation of transcription

cytoplasm
nucleus

transferase activity
methyltransferase activity
histone-arginine N-methyltransferase activity
protein methyltransferase activity
protein binding
transcription coactivator activity

1ri4A

[pdb]

0.658
0.0020236

70^ASP 72^GLY 74^GLY 135^ASP 164^LEU 168^GLY

2.1.1.56

mRNA processing
mRNA capping

nucleus

transferase activity
methyltransferase activity
RNA binding
mRNA (guanine-N7-)-methyltransferase activity

3ccfB

[pdb]

0.662325
0.00207575

44^ASP 46^GLY 48^GLY 100^ASP 125^LEU 129^GLY

0.0.0.0

metabolic process

transferase activity
methyltransferase activity
trans-aconitate 2-methyltransferase activity

1xtpA

[pdb]

0.663705
0.00207582

99^ASP 101^GLY 103^GLY 160^ASP 187^LEU 191^GLY

0.0.0.0

methyltransferase activity

3dlcA

[pdb]

0.665276
0.0020759

48^ASP 50^GLY 52^GLY 112^ASP 137^LEU 141^GLY

0.0.0.0

metabolic process

transferase activity
methyltransferase activity

2iipA

[pdb]

0.671293
0.00212691

61^ASP 63^GLY 65^GLY 158^ASP 187^LEU 191^GLY

2.1.1.1

cytoplasm

transferase activity
methyltransferase activity
nicotinamide N-methyltransferase activity

1vlmA

[pdb]

0.672223
0.00212695

41^GLU 43^GLY 45^GLY 92^ASP 117^LEU 121^GLY

0.0.0.0

metabolic process

methyltransferase activity

2p35A

[pdb]

0.686923
0.00227217

36^ASP 38^GLY 40^GLY 94^ASP 119^LEU 123^GLY

2.1.1.144

cytoplasm

metabolic process

transferase activity
methyltransferase activity
trans-aconitate 2-methyltransferase activity

2gh1A

[pdb]

0.702756
0.00236471

45^ASP 47^GLY 49^GLY 108^ASP 133^VAL 137^GLY

0.0.0.0

transferase activity
methyltransferase activity

2ex4B

[pdb]

0.705766
0.00236484

68^ASP 70^GLY 72^GLY 131^ASP 158^LEU 162^GLY

transferase activity
methyltransferase activity
protein binding

2gq8A

[pdb]

0.71485
0.00240945

185^GLY 189^ASN 215^ASP 216^GLU 218^VAL 242^GLY

0.0.0.0

metabolic process

oxidoreductase activity
FMN binding
catalytic activity

1kpgB

[pdb]

0.718607
0.00245246

70^ASP 72^GLY 74^GLY 131^ASP 158^LEU 162^GLY

2.1.1.79

cytoplasm
cytoplasm

lipid biosynthetic process
lipid biosynthetic process

transferase activity
methyltransferase activity
cyclopropane-fatty-acyl-phospholipid synthase activity
transferase activity
methyltransferase activity
cyclopropane-fatty-acyl-phospholipid synthase activity

1tw2B

[pdb]

0.719381
0.00245249

184^ASP 186^GLY 188^GLY 246^ASP 273^LEU 277^GLY

0.0.0.0

antibiotic biosynthetic process

transferase activity
methyltransferase activity
ATP binding
nucleotide binding
O-methyltransferase activity

3d2lC

[pdb]

0.743065
0.00257395

38^ASP 40^GLY 42^GLY 97^ASP 126^LEU 130^GLY

0.0.0.0

1tpyA

[pdb]

0.757988
0.00264845

70^ASP 72^GLY 74^GLY 131^ASP 158^LEU 162^GLY

0.0.0.0

lipid biosynthetic process

transferase activity
methyltransferase activity
cyclopropane-fatty-acyl-phospholipid synthase activity

1z45A

[pdb]

0.762352
0.00268373

99^GLU 100^SER 103^ILE 111^ASN 114^GLY 118^LEU

5.1.3.2, 5.1.3.3

galactose metabolic process
carbohydrate metabolic process
galactose catabolic process via UDP-galactose
cellular metabolic process
metabolic process

isomerase activity
catalytic activity
aldose 1-epimerase activity
UDP-glucose 4-epimerase activity
coenzyme binding
carbohydrate binding
binding

soluble fraction

3egeA

[pdb]

0.776278
0.00275105

39^ASP 41^GLY 43^GLY 95^ASP 120^ILE 123^GLY

0.0.0.0

metabolic process

methyltransferase activity

2i62B

[pdb]

0.778717
0.00275113

62^ASP 64^GLY 66^GLY 159^ASP 188^LEU 192^GLY

2.1.1.1

cytoplasm

transferase activity
methyltransferase activity
nicotinamide N-methyltransferase activity

1xdsA

[pdb]

0.781717
0.00278311

188^ASP 190^GLY 192^GLY 250^ASP 277^LEU 281^GLY

0.0.0.0

O-methyltransferase activity

1yzhA

[pdb]

0.795369
0.00284483

44^GLU 46^GLY 48^GLY 110^ASP 143^LEU 147^GLY

2.1.1.33

tRNA processing
tRNA modification

transferase activity
methyltransferase activity
tRNA (guanine-N7-)-methyltransferase activity

2p8jA

[pdb]

0.821437
0.00293405

28^ASP 30^GLY 32^GLY 90^SER 117^LEU 121^GLY

0.0.0.0

metabolic process

transferase activity
methyltransferase activity

3bjiB

[pdb]

0.84102
0.0030218

377^ASN 378^GLU 380^LEU 542^GLN 543^GLY 553^ALA

T cell activation
positive regulation of lamellipodium assembly
cell adhesion
negative regulation of receptor-mediated endocytosis
ruffle organization
lamellipodium assembly
actin filament polymerization
positive regulation of Rho protein signal transduction
response to wounding
anatomical structure morphogenesis
intracellular signaling cascade
inflammatory response
cell motion
small GTPase mediated signal transduction
localization within membrane
regulation of hydrogen peroxide metabolic process
regulation of respiratory burst
regulation of Rho protein signal transduction
intracellular signaling cascade
positive regulation of cell adhesion
regulation of GTPase activity
integrin-mediated signaling pathway
immune response
phagocytosis

melanosome
plasma membrane
membrane
cytosol
intracellular
cytoplasm
intracellular
intracellular membrane-bounded organelle

protein binding
GTPase activity
GTP binding
nucleotide binding
GTP-dependent protein binding
enzyme binding
protein binding
metal ion binding
diacylglycerol binding
zinc ion binding
guanyl-nucleotide exchange factor activity
transcription factor activity
Rho guanyl-nucleotide exchange factor activity
Rac guanyl-nucleotide exchange factor activity

2vrwB

[pdb]

0.865403
0.00314583

377^ASN 378^GLU 380^LEU 542^GLN 543^GLY 553^ALA

intracellular
melanosome
plasma membrane
membrane
cytosol
intracellular

metal ion binding
diacylglycerol binding
zinc ion binding
guanyl-nucleotide exchange factor activity
Rac guanyl-nucleotide exchange factor activity
protein binding
Rho guanyl-nucleotide exchange factor activity
protein binding
GTPase activity
GTP binding
nucleotide binding
GTP-dependent protein binding
enzyme binding

positive regulation of lamellipodium assembly
cell adhesion
positive regulation of cell adhesion
regulation of GTPase activity
T cell activation
T cell differentiation
intracellular signaling cascade
integrin-mediated signaling pathway
immune response
phagocytosis
regulation of Rho protein signal transduction
negative regulation of receptor-mediated endocytosis
ruffle organization
lamellipodium assembly
actin filament polymerization
positive regulation of Rho protein signal transduction
response to wounding
anatomical structure morphogenesis
intracellular signaling cascade
inflammatory response
cell motion
small GTPase mediated signal transduction
localization within membrane
regulation of hydrogen peroxide metabolic process
regulation of respiratory burst

2uvfB

[pdb]

0.872998
0.00318001

217^LEU 219^GLY 272^ASN 301^VAL 303^GLU 304^ASP

0.0.0.0

carbohydrate metabolic process

polygalacturonase activity

2d80A

[pdb]

0.874269
0.00318006

38^LEU 40^SER 42^GLY 212^ALA 226^GLY 282^GLN

0.0.0.0

carbohydrate metabolic process

extracellular region

hydrolase activity
cellulose binding
hydrolase activity
hydrolyzing O-glycosyl compounds

2oxaA

[pdb]

0.899368
0.00329572

80^GLY 114^GLY 297^ASP 316^LEU 319^ASN 323^ASP

0.0.0.0

peptidase activity
serine-type endopeptidase activity
serine-type peptidase activity
hydrolase activity

proteolysis

3d1rA

[pdb]

0.899577
0.00329573

107^GLY 126^GLY 129^ALA 225^ASP 277^ASN 279^ILE

3.1.3.11

carbohydrate metabolic process
glycerol metabolic process

cytoplasm

manganese ion binding
hydrolase activity
fructose 1,6-bisphosphate 1-phosphatase activity

2onyA

[pdb]

0.904971
0.00333981

77^ASP 79^GLY 81^GLY 176^ASP 205^LEU 209^GLY

2.1.1.28

catecholamine biosynthetic process

transferase activity
methyltransferase activity
phenylethanolamine N-methyltransferase activity

3cggA

[pdb]

0.926177
0.00349537

51^ASP 53^GLY 55^GLY 108^ASP 136^LEU 140^GLY

0.0.0.0

transferase activity
methyltransferase activity
transferase activity
methyltransferase activity

1fzdB

[pdb]

0.927447
0.00349544

734^LEU 762^ASN 763^ASN 797^ASN 800^GLY 821^GLY

blood coagulation
protein polymerization
platelet activation
signal transduction
tissue regeneration
response to calcium ion

extracellular region
platelet alpha granule lumen
plasma membrane
fibrinogen complex
platelet alpha granule
external side of plasma membrane
extracellular space

protein binding
protein binding
bridging
receptor binding
eukaryotic cell surface binding

2ft3F

[pdb]

0.92954
0.00355373

63^ASN 85^LEU 88^ASN 132^ASP 155^GLY 182^ALA

peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan

protein binding
glycosaminoglycan binding
extracellular matrix binding

proteinaceous extracellular matrix
extracellular region
transport vesicle
extracellular matrix
sarcolemma
intracellular part

1kywA

[pdb]

0.93091
0.00355382

206^ASP 208^GLY 210^GLY 260^ASP 287^LEU 291^GLY

2.1.1.68

lignin biosynthetic process

transferase activity
methyltransferase activity
caffeate O-methyltransferase activity
protein dimerization activity
O-methyltransferase activity

2fgeA

[pdb]

0.937197
0.00361503

605^GLY 609^LEU 670^GLN 740^GLY 741^ILE 743^SER

apoplast
chloroplast envelope
chloroplast stroma
chloroplast
mitochondrion
mitochondrial matrix
plastid

peptidase activity
metalloendopeptidase activity
metal ion binding
hydrolase activity
zinc ion binding
metallopeptidase activity
magnesium ion binding
catalytic activity

protein maturation by peptide bond cleavage
response to cadmium ion
proteolysis

2qm1D

[pdb]

0.956652
0.00375547

75^SER 83^VAL 85^GLY 114^ASP 307^ALA 308^GLY

0.0.0.0

cytoplasm

glycolysis

kinase activity
glucokinase activity

1iyxB

[pdb]

0.965769
0.00392272

111^LEU 313^GLY 314^ASP 316^LEU 342^GLN 344^GLY

4.2.1.11

cell surface
cytoplasm
extracellular region
phosphopyruvate hydratase complex

glycolysis

metal ion binding
lyase activity
magnesium ion binding
phosphopyruvate hydratase activity

1bvoA

[pdb]

0.966657
0.00392281

73^GLY 148^GLY 150^GLN 156^ASP 159^GLU 161^LEU

0.0.0.0

nucleus

protein binding
transcription factor activity

regulation of alternative nuclear mRNA splicing
via spliceosome
plasmatocyte differentiation
regulation of transcription
regulation of transcription
DNA-dependent

1rp4A

[pdb]

0.971583
0.00392328

85^ASP 126^GLY 175^ASN 177^VAL 190^GLY 353^ASP

cellular response to heat
oxidation reduction
electron transport chain
transport
protein thiol-disulfide exchange
protein folding

endoplasmic reticulum membrane
membrane
endoplasmic reticulum

oxidoreductase activity
thiol oxidase activity
electron carrier activity
FAD binding
oxidoreductase activity
acting on sulfur group of donors
disulfide as acceptor
protein binding

2qyoB

[pdb]

0.974117
0.00401874

199^ASP 201^GLY 203^GLY 253^ASP 280^VAL 287^GLY

0.0.0.0

protein dimerization activity
O-methyltransferase activity
methyltransferase activity

2fgiB

[pdb]

0.976823
0.00401902

567^GLY 568^ASN 631^VAL 641^ASP 643^GLY 645^ALA

2.7.10.1

membrane fraction
integral to membrane
membrane
plasma membrane
integral to plasma membrane

protein amino acid phosphorylation
cell growth
fibroblast growth factor receptor signaling pathway
skeletal system development
MAPKKK cascade

protein binding
fibroblast growth factor receptor activity
heparin binding
ATP binding
protein tyrosine kinase activity
transferase activity
kinase activity
receptor activity
nucleotide binding
transmembrane receptor protein tyrosine kinase activity
protein kinase activity

1qmiD

[pdb]

0.979245
0.00412345

97^GLY 124^GLY 126^ASP 195^GLU 196^VAL 238^SER

6.5.1.4

RNA processing

cytoplasm

nucleotide binding
ATP binding
ligase activity
RNA-3'-phosphate cyclase activity
ligase activity
forming phosphoric ester bonds
catalytic activity

2nm0A

[pdb]

0.982153
0.00412379

10^GLY 19^ALA 75^ASN 96^VAL 139^ASN 143^SER

0.0.0.0

NAD or NADH binding
oxidoreductase activity
binding
3-oxoacyl-[acyl-carrier-protein] reductase activity
catalytic activity

oxidation reduction
metabolic process
fatty acid biosynthetic process

3f6tA

[pdb]

0.988112
0.00423848

35^LEU 464^LEU 466^ASN 467^ASN 470^GLN 490^GLY

0.0.0.0

biosynthetic process

transferase activity
transaminase activity
L-aspartate:2-oxoglutarate aminotransferase activity
pyridoxal phosphate binding
transferase activity
transferring nitrogenous groups
catalytic activity

1fp1D

[pdb]

0.988654
0.00423855

215^ASP 217^GLY 219^GLY 269^ASP 296^LEU 300^GLY

0.0.0.0

transferase activity
methyltransferase activity
protein dimerization activity
O-methyltransferase activity

2iouD

[pdb]

0.990434
0.00423877

163^ALA 164^GLY 167^ARG 192^GLN 371^ARG 373^LEU

0.0.0.0

cell outer membrane
membrane
plasma membrane
outer membrane

pathogenesis
cell adhesion

protein binding

1jbqD

[pdb]

0.995411
0.00436411

149^ASN 151^GLY 154^LEU 303^VAL 348^GLY 349^SER

4.2.1.22

L-serine metabolic process
L-serine catabolic process
L-cysteine catabolic process
homocysteine catabolic process
regulation of JUN kinase activity
homocysteine metabolic process
hydrogen sulfide biosynthetic process
cysteine biosynthetic process
cellular amino acid biosynthetic process
cysteine metabolic process
cysteine biosynthetic process via cystathionine
metabolic process
cysteine biosynthetic process from serine

intracellular membrane-bounded organelle
nucleolus
cytosol
cytoplasm
nucleus

protein binding
enzyme binding
heme binding
ubiquitin protein ligase binding
identical protein binding
protein homodimerization activity
metal ion binding
lyase activity
iron ion binding
catalytic activity
cystathionine beta-synthase activity
pyridoxal phosphate binding

2p4sB

[pdb]

0.995681
0.00436415

213^ASP 271^GLU 272^LEU 297^LEU 298^GLY 300^ASP

0.0.0.0

nucleoside metabolic process
nucleobase
nucleoside
nucleotide and nucleic acid metabolic process

transferase activity
transferring glycosyl groups
transferase activity
purine-nucleoside phosphorylase activity
transferase activity
transferring pentosyl groups
catalytic activity

2be1A

[pdb]

0.997725
0.00436443

127^ASP 130^GLY 140^GLY 142^ILE 154^LEU 348^SER

2.7.11.1

endoplasmic reticulum
endoplasmic reticulum membrane
integral to membrane
membrane
nucleus

mRNA processing
response to unfolded protein
regulation of transcription
DNA-dependent
transcription
fungal-type cell wall organization
endoplasmic reticulum unfolded protein response
protein amino acid phosphorylation
inositol metabolic process
regulation of transcription

magnesium ion binding
metal ion binding
hydrolase activity
transferase activity
kinase activity
ATP binding
protein serine/threonine kinase activity
catalytic activity
nucleotide binding
unfolded protein binding
protein homodimerization activity
endoribonuclease activity
endoribonuclease activity
producing 5'-phosphomonoesters
protein kinase activity
identical protein binding

1zgaA

[pdb]

1.00233
0.00450141

205^ASP 207^GLY 209^GLY 259^ASP 286^ILE 293^GLY

0.0.0.0

transferase activity
methyltransferase activity
protein dimerization activity
O-methyltransferase activity

1kcwA

[pdb]

1.01084
0.00465164

565^VAL 631^GLY 632^ASN 902^LEU 969^GLY 971^GLU

1.16.3.1

extracellular region
extracellular space
anchored to plasma membrane

metal ion binding
oxidoreductase activity
copper ion binding
ferroxidase activity

oxidation reduction
copper ion transport
ion transport
transport
cellular iron ion homeostasis
response to nutrient
aging

1qrpE

[pdb]

1.01174
0.00465179

223^GLY 240^ASN 244^ASP 246^VAL 287^GLN 298^LEU

3.4.23.1

aspartic-type endopeptidase activity
hydrolase activity
peptidase activity

cellular_component
extracellular region

digestion
proteolysis

1ru4A

[pdb]

1.01225
0.00465188

275^GLY 281^GLY 292^GLY 294^VAL 299^ASP 317^ASN

4.2.2.2

extracellular region
extracellular region

lyase activity
calcium ion binding
pectate lyase activity
lyase activity
calcium ion binding
pectate lyase activity

1qhnA

[pdb]

1.01395
0.00465215

52^GLY 53^GLY 55^GLU 59^ASP 137^VAL 139^GLY

0.0.0.0

response to antibiotic

transferase activity
kinase activity
ATP binding
nucleotide binding

3fihB

[pdb]

1.01421
0.0046522

70^G 75^C 164^GLY 193^GLY 194^PHE 195^LEU

membrane
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
small ribosomal subunit
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
small ribosomal subunit
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
small ribosomal subunit
intracellular
ribonucleoprotein complex
ribosome
small ribosomal subunit
intracellular
ribonucleoprotein complex
ribosome
intracellular
plasma membrane
cytoplasm
membrane
intracellular
ribonucleoprotein complex
ribosome
small ribosomal subunit
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
small ribosomal subunit
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
small ribosomal subunit
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
small ribosomal subunit
intracellular
ribonucleoprotein complex
ribosome
intracellular

rRNA binding
RNA binding
structural constituent of ribosome
structural constituent of ribosome
rRNA binding
RNA binding
tRNA binding
structural constituent of ribosome
rRNA binding
RNA binding
structural constituent of ribosome
rRNA binding
RNA binding
structural constituent of ribosome
protein binding
rRNA binding
RNA binding
structural constituent of ribosome
rRNA binding
RNA binding
structural constituent of ribosome
hydrolase activity
endonuclease activity
nuclease activity
structural constituent of ribosome
rRNA binding
RNA binding
structural constituent of ribosome
rRNA binding
RNA binding
structural constituent of ribosome
protein binding
rRNA binding
RNA binding
tRNA binding
structural constituent of ribosome
rRNA binding
RNA binding
tRNA binding
structural constituent of ribosome
nucleic acid binding
GTP binding
translation elongation factor activity
nucleotide binding
GTPase activity
protein binding
structural constituent of ribosome
RNA binding
protein binding
tRNA binding
rRNA binding
RNA binding
structural constituent of ribosome
rRNA binding
RNA binding
structural constituent of ribosome
protein binding
RNA binding
tRNA binding
structural constituent of ribosome
protein binding
structural constituent of ribosome
protein binding
structural constituent of ribosome
rRNA binding
rRNA binding
RNA binding
structural constituent of ribosome
rRNA binding
RNA binding
tRNA binding
structural constituent of ribosome
rRNA binding
RNA binding
structural constituent of ribosome

translation
translation
response to antibiotic
translation
response to antibiotic
translation
translation
translation
translation
translation
translation
response to antibiotic
regulation of translation
regulation of transcription
DNA-dependent
transcription termination
transcription
translation
translation
translation
response to antibiotic
translation
translational elongation
translation
regulation of translation
translation
response to antibiotic
translation
translation
translation
translation
translation
translation
translation
regulation of transcription

1fwxD

[pdb]

1.02062
0.00481581

91^ASP 92^GLY 330^GLY 332^GLY 386^ASP 446^ILE

1.7.99.6

metal ion binding
chloride ion binding
oxidoreductase activity
copper ion binding
nitrous-oxide reductase activity
cytochrome-c oxidase activity
calcium ion binding

oxidation reduction

periplasmic space
membrane

3b89A

[pdb]

1.02151
0.004993

90^GLU 92^ASP 94^LEU 113^GLY 115^ASN 136^LEU

0.0.0.0

methyltransferase activity
rRNA methyltransferase activity

response to antibiotic

1qlbA

[pdb]

1.02179
0.00499306

76^PRO 78^VAL 405^LEU 557^ASP 604^ILE 606^ASN

1.3.99.1

mitochondrial respiratory chain
mitochondrial respiratory chain
respiratory chain
respiratory chain
respiratory chain
plasma membrane
integral to membrane
membrane
mitochondrial respiratory chain

oxidation reduction
electron transport chain
transport
oxidation reduction
electron transport chain
transport
tricarboxylic acid cycle
electron transport chain
transport
tricarboxylic acid cycle

oxidoreductase activity
succinate dehydrogenase activity
FAD binding
oxidoreductase activity
acting on the CH-CH group of donors
electron carrier activity
4 iron
4 sulfur cluster binding
3 iron
4 sulfur cluster binding
2 iron
2 sulfur cluster binding
iron-sulfur cluster binding
metal ion binding
oxidoreductase activity
iron ion binding
succinate dehydrogenase activity
electron carrier activity
metal ion binding
iron ion binding

2rhpA

[pdb]

1.02483
0.00499365

868^GLY 947^VAL 955^SER 956^GLU 1004^GLU 1148^GLY

cell adhesion

heparin binding
protein binding
calcium ion binding
structural molecule activity

platelet alpha granule lumen
extracellular region