The LabelHash Server
1ggmA motif
Motif residues: GLU188 GLU239 GLU241 ARG311 GLU359 SER361
Table of Top 100 matches
Click here for a compact table with the top 100 matches.The images below show the motif residues and the match residues superimposed. The carbon atoms are white in the motif and green in the match. Other atoms in the motif and match are colored by element. The C-alphas are shown as spheres, while the remaining motif and match atoms are shown in stick representation. The rest of the matching protein is shown in ribbon representation.
Downloads
- A zip file with PDB files for the top 100 matches and the motif itself.
- An XML file with all matches. You can open this file in Chimera with our ViewMatch plugin.
Top 20 matches
For each match you can click on the "[pdb]" link to download a PDB file with the matching chain aligned with the motif.1. 1b76B [pdb]
LRMSD: 0.225118622184p-value: 2.54905899055e-05
Matching residues: GLU188 GLU239 GLU241 ARG311 GLU359 SER361
EC class: 6.1.1.14
GO terms:
Molecular function: ligase activity, ATP binding, aminoacyl-tRNA ligase activity, nucleotide binding, glycine-tRNA ligase activity
Biological process: translation, glycyl-tRNA aminoacylation, tRNA aminoacylation for protein translation
Cellular component: cytoplasm
2. 1atiA [pdb]
LRMSD: 0.320168882608p-value: 6.38816491119e-05
Matching residues: GLU188 GLU239 GLU241 ARG311 GLU359 SER361
EC class: 6.1.1.14
GO terms:
Molecular function: ligase activity, ATP binding, aminoacyl-tRNA ligase activity, nucleotide binding, glycine-tRNA ligase activity
Biological process: translation, glycyl-tRNA aminoacylation, tRNA aminoacylation for protein translation
Cellular component: cytoplasm
3. 2q5iA [pdb]
LRMSD: 0.846432030201p-value: 0.000139792740811
Matching residues: GLU245 GLU296 GLU298 ARG410 GLU522 SER524
EC class: 6.1.1.14
GO terms:
Molecular function: ligase activity, ATP binding, aminoacyl-tRNA ligase activity, nucleotide binding, glycine-tRNA ligase activity, protein binding
Biological process: translation, glycyl-tRNA aminoacylation, tRNA aminoacylation for protein translation, regulated secretory pathway, cell death
Cellular component: cytoplasm, soluble fraction, secretory granule
4. 3d6jA [pdb]
LRMSD: 0.865408658981p-value: 0.000154827197548
Matching residues: THR23 LEU50 GLU72 SER74 GLU76 ALA77
EC class: 0.0.0.0
GO terms:
Molecular function: hydrolase activity, phosphoglycolate phosphatase activity, catalytic activity
Biological process: metabolic process
5. 2p62A [pdb]
LRMSD: 0.922541618347p-value: 0.000200597613002
Matching residues: THR12 GLU14 SER15 LEU20 GLU153 SER205
EC class: 0.0.0.0
GO terms:
6. 2px5A [pdb]
LRMSD: 1.03458511829p-value: 0.000320952036418
Matching residues: GLU10 SER153 GLU155 GLU157 GLU158 LEU184
EC class: 2.7.7.48, 3.4.21.91
GO terms:
Molecular function: hydrolase activity, nucleotidyltransferase activity, transferase activity, ATP binding, structural molecule activity, helicase activity, RNA-directed RNA polymerase activity, nucleotide binding, ATP-dependent helicase activity, serine-type endopeptidase activity, catalytic activity, double-stranded RNA binding, RNA helicase activity, RNA binding, nucleic acid binding, methyltransferase activity
Biological process: transcription, RNA-dependent, viral genome replication, viral infectious cycle, RNA metabolic process, viral reproduction, methylation
Cellular component: membrane, viral envelope, viral capsid, viral nucleocapsid, virion, integral to membrane, virion part
7. 2oy0B [pdb]
LRMSD: 1.04564750195p-value: 0.000331362884026
Matching residues: GLU10 SER153 GLU155 GLU157 GLU158 LEU184
EC class: 2.7.7.48, 3.4.21.91
GO terms:
Molecular function: hydrolase activity, ATP binding, helicase activity, nucleotide binding, ATP-dependent helicase activity, structural molecule activity, serine-type endopeptidase activity, RNA-directed RNA polymerase activity, catalytic activity, double-stranded RNA binding, RNA helicase activity, RNA binding, nucleic acid binding, hydrolase activity, nucleotidyltransferase activity, transferase activity, ATP binding, structural molecule activity, helicase activity, RNA-directed RNA polymerase activity, nucleotide binding, ATP-dependent helicase activity, serine-type endopeptidase activity, catalytic activity, double-stranded RNA binding, RNA helicase activity, RNA binding, nucleic acid binding, methyltransferase activity, methyltransferase activity
Biological process: transcription, RNA-dependent, viral genome replication, viral infectious cycle, RNA metabolic process, viral reproduction, transcription, RNA-dependent, viral genome replication, viral infectious cycle, RNA metabolic process, viral reproduction, methylation, methylation
Cellular component: viral envelope, virion, integral to membrane, membrane, virion part, viral capsid, membrane, viral envelope, viral capsid, viral nucleocapsid, virion, integral to membrane, virion part
8. 2ag1D [pdb]
LRMSD: 1.04976773262p-value: 0.000341896491591
Matching residues: LEU211 GLU214 SER216 THR218 ALA219 GLU327
EC class: 0.0.0.0
GO terms:
Molecular function: lyase activity, thiamin pyrophosphate binding, catalytic activity, magnesium ion binding
9. 2ovwD [pdb]
LRMSD: 1.05180883408p-value: 0.000341918843333
Matching residues: THR15 LEU122 GLU126 SER128 GLU393 THR397
EC class: 3.2.1.4
GO terms:
Molecular function: hydrolase activity, acting on glycosyl bonds, hydrolase activity, cellulase activity, hydrolase activity, hydrolyzing O-glycosyl compounds
Biological process: cellulose catabolic process, metabolic process, carbohydrate metabolic process, polysaccharide catabolic process
10. 1avhA [pdb]
LRMSD: 1.10426056385p-value: 0.000441134907305
Matching residues: ALA27 THR33 GLU36 SER37 LEU42 GLU72
EC class: 0.0.0.0
GO terms:
Molecular function: calcium-dependent phospholipid binding, calcium ion binding, phospholipid binding, phospholipase inhibitor activity, protein binding, eukaryotic cell surface binding
Biological process: signal transduction, anti-apoptosis, blood coagulation, negative regulation of coagulation, protein homooligomerization, response to organic substance
Cellular component: cytoplasm, intracellular
11. 3d85D [pdb]
LRMSD: 1.15435421467p-value: 0.000560822489206
Matching residues: LEU107 THR131 ALA151 THR152 GLU166 SER168
EC class: GO terms:
Molecular function: antigen binding, protein binding, cytokine activity, antigen binding, protein binding, protein heterodimerization activity, cytokine activity, growth factor activity, interleukin-12 receptor binding, signal transducer activity, cytokine receptor activity, protein binding, protein homodimerization activity, interleukin-12 alpha subunit binding
Biological process: immune response, tissue remodeling, innate immune response, response to virus, immune response, inflammatory response, T cell proliferation, natural killer cell activation during immune response, immune response, positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target, positive regulation of lymphocyte proliferation, positive regulation of cell adhesion, cell migration, positive regulation of natural killer cell activation, positive regulation of interferon-gamma production, interferon-gamma biosynthetic process, T-helper cell differentiation, response to UV-B, positive regulation of interferon-gamma biosynthetic process, T-helper 1 type immune response, regulation of cytokine biosynthetic process, positive regulation of activated T cell proliferation, natural killer cell activation, positive regulation of T cell proliferation, sensory perception of pain, cell surface receptor linked signal transduction, negative regulation of smooth muscle cell proliferation, positive regulation of smooth muscle cell apoptosis, cell cycle arrest
Cellular component: extracellular region, cytoplasm, extracellular region, extracellular space, membrane fraction, extracellular region, interleukin-12 complex, extracellular space, extracellular region, membrane
12. 3eucA [pdb]
LRMSD: 1.16200327873p-value: 0.000581842381507
Matching residues: GLU284 SER348 THR349 GLU351 GLU352 LEU357
EC class: 2.6.1.9
GO terms:
Molecular function: transferase activity, transaminase activity, histidinol-phosphate transaminase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, catalytic activity
Biological process: cellular amino acid biosynthetic process, histidine biosynthetic process, biosynthetic process
13. 2qezC [pdb]
LRMSD: 1.19961225986p-value: 0.000750199484173
Matching residues: LEU117 SER119 GLU120 THR126 THR306 ALA309
EC class: GO terms:
Molecular function: lyase activity, ethanolamine ammonia-lyase activity
Biological process: cellular amino acid metabolic process
14. 1ipjC [pdb]
LRMSD: 1.21231710911p-value: 0.00078741525067
Matching residues: THR161 SER165 GLU166 GLU168 GLU169 LEU174
EC class: GO terms:
Molecular function: nutrient reservoir activity
Cellular component: vacuole, aleurone grain
15. 1he1B [pdb]
LRMSD: 1.21931564808p-value: 0.000827457231935
Matching residues: SER121 GLU122 ALA124 THR125 LEU148 THR207
EC class: 0.0.0.0
GO terms:
Molecular function: GTP binding, nucleotide binding, GTP binding, nucleotide binding, protein binding, GTPase activity, GTP binding, nucleotide binding, GTP-dependent protein binding, enzyme binding, GTPase activity, protein binding, GTP binding, protein binding, GTPase activity, nucleotide binding, GTPase activator activity
Biological process: small GTPase mediated signal transduction, small GTPase mediated signal transduction, negative regulation of receptor-mediated endocytosis, ruffle organization, lamellipodium assembly, actin filament polymerization, positive regulation of Rho protein signal transduction, response to wounding, anatomical structure morphogenesis, intracellular signaling cascade, inflammatory response, cell motion, small GTPase mediated signal transduction, localization within membrane, regulation of hydrogen peroxide metabolic process, regulation of respiratory burst, endocytosis, hyperosmotic response, cytoskeleton organization, cell adhesion, axon guidance, dendrite development, cell migration, cerebral cortex radially oriented cell migration, embryonic olfactory bulb interneuron precursor migration, regulation of cell migration, positive regulation of actin filament polymerization, positive regulation of phosphoinositide 3-kinase activity, positive regulation of lamellipodium assembly, cell adhesion, bone resorption, dendrite development, small GTPase mediated signal transduction, cell adhesion, cytoskeleton organization, hyperosmotic response, endocytosis, actin cytoskeleton organization, cell proliferation, chemotaxis, positive regulation of phosphoinositide 3-kinase activity, positive regulation of actin filament polymerization, regulation of cell migration, lamellipodium assembly, embryonic olfactory bulb interneuron precursor migration, cerebral cortex radially oriented cell migration, cell migration, axon guidance, pathogenesis
Cellular component: melanosome, plasma membrane, membrane, intracellular, melanosome, plasma membrane, membrane, intracellular, melanosome, plasma membrane, membrane, cytosol, intracellular, membrane fraction, cytoplasm, cytoplasmic membrane-bounded vesicle, extrinsic to plasma membrane, lamellipodium, cell projection, cytoplasm, membrane fraction, intracellular, melanosome, plasma membrane, membrane, cell projection, lamellipodium, extrinsic to plasma membrane, cytoplasmic membrane-bounded vesicle, membrane, extracellular region
16. 2flqB [pdb]
LRMSD: 1.22187042236p-value: 0.000870512041729
Matching residues: ALA93 THR95 GLU97 GLU98 LEU103 GLU128
EC class: 0.0.0.0
GO terms:
Molecular function: nitric-oxide synthase activity
Biological process: nitric oxide biosynthetic process
17. 1nclA [pdb]
LRMSD: 1.22244632244p-value: 0.000870538933668
Matching residues: GLU9 LEU13 SER124 SER126 GLU128 GLU133
EC class: 2.7.4.6
GO terms:
Molecular function: metal ion binding, transferase activity, kinase activity, ATP binding, magnesium ion binding, nucleotide binding, nucleoside diphosphate kinase activity
Biological process: nucleotide metabolic process, CTP biosynthetic process, UTP biosynthetic process, GTP biosynthetic process
Cellular component: cytoplasm
18. 3bywA [pdb]
LRMSD: 1.23167765141p-value: 0.000917312165257
Matching residues: ARG98 SER113 GLU116 ALA139 GLU141 THR144
EC class: 0.0.0.0
GO terms:
Molecular function: transferase activity, transferase activity, transferring pentosyl groups
Biological process: peptidoglycan biosynthetic process
Cellular component: integral to membrane
19. 1zs6D [pdb]
LRMSD: 1.23576128483p-value: 0.000967434316408
Matching residues: GLU22 LEU26 SER137 SER139 GLU141 GLU146
EC class: 2.7.4.6
GO terms:
Molecular function: metal ion binding, transferase activity, kinase activity, ATP binding, magnesium ion binding, nucleotide binding, nucleoside diphosphate kinase activity
Biological process: nucleotide metabolic process, apoptosis, induction of apoptosis, CTP biosynthetic process, UTP biosynthetic process, GTP biosynthetic process
Cellular component: cytosol
