The LabelHash Server

Top 100 matches

For each match you can click on the "[pdb]" link to download a PDB file with the matching chain aligned with the motif.
Download a zip file with PDB files for all the matches and the motif itself.

PDB ID	LRMSD / p-value	Matching Residues	EC	Gene Ontology annotations
1epzA	[pdb]	0.131473 2.45944e-05	53^SER 61^ARG 64^HIS 73^LYS 90^ARG 172^ASP	0.0.0.0		dTDP-4-dehydrorhamnose 3,5-epimerase activity	lipopolysaccharide biosynthetic process
1dztB	[pdb]	0.369861 9.24234e-05	52^SER 60^ARG 63^HIS 73^LYS 90^ARG 170^ASP	5.1.3.13		isomerase activity dTDP-4-dehydrorhamnose 3,5-epimerase activity	lipopolysaccharide biosynthetic process
2ixiB	[pdb]	0.421036 0.000116155	51^SER 59^ARG 62^HIS 71^LYS 88^ARG 168^ASP	0.0.0.0		dTDP-4-dehydrorhamnose 3,5-epimerase activity	lipopolysaccharide biosynthetic process
1upiA	[pdb]	0.577257 0.000200785	51^SER 59^ARG 62^HIS 72^LYS 89^ARG 171^ASP	0.0.0.0		isomerase activity dTDP-4-dehydrorhamnose 3,5-epimerase activity	lipopolysaccharide biosynthetic process
2b9uG	[pdb]	0.643839 0.000248479	50^SER 58^ARG 61^HIS 71^LYS 88^ARG 163^ASP	0.0.0.0		dTDP-4-dehydrorhamnose 3,5-epimerase activity	lipopolysaccharide biosynthetic process
1nxmB	[pdb]	0.713829 0.000306063	65^SER 73^ARG 76^HIS 82^LYS 100^ARG 180^ASP	0.0.0.0		isomerase activity dTDP-4-dehydrorhamnose 3,5-epimerase activity	lipopolysaccharide biosynthetic process
1wa4A	[pdb]	0.74558 0.000338293	52^SER 60^ARG 63^HIS 73^LYS 90^ARG 170^ASP	0.0.0.0		dTDP-4-dehydrorhamnose 3,5-epimerase activity	lipopolysaccharide biosynthetic process
2c0zA	[pdb]	0.746442 0.000338298	51^SER 59^ARG 62^HIS 72^LYS 89^ARG 168^ASP	0.0.0.0		dTDP-4-dehydrorhamnose 3,5-epimerase activity	lipopolysaccharide biosynthetic process
2glfB	[pdb]	1.32514 0.000535036	32^ALA 73^LYS 94^HIS 256^ALA 293^ARG 328^ASP	0.0.0.0	metal ion binding hydrolase activity zinc ion binding metallopeptidase activity peptidase activity aminopeptidase activity	proteolysis	vacuole
1md9A	[pdb]	1.3271 0.000535055	34^ARG 183^ASP 202^ARG 204^HIS 212^LYS 388^THR		cytoplasm	ligase activity ATP binding nucleotide binding (2,3-dihydroxybenzoyl)adenylate synthase activity catalytic activity	metabolic process siderophore biosynthetic process
2qyvA	[pdb]	1.36964 0.000599679	28^LYS 49^ARG 76^HIS 111^THR 114^ALA 169^ASP	0.0.0.0		dipeptidase activity hydrolase activity protein dimerization activity metallopeptidase activity	proteolysis
1ti8A	[pdb]	1.37092 0.000599695	131^GLU 183^HIS 193^LYS 219^ALA 229^ARG 231^ASP	0.0.0.0	host cell surface receptor binding host cell surface receptor binding	viral envelope fusion with host membrane viral envelope fusion with host membrane	virion membrane apical plasma membrane viral envelope virion integral to membrane membrane plasma membrane virion membrane apical plasma membrane viral envelope virion integral to membrane membrane plasma membrane
2dkcB	[pdb]	1.38567 0.000625109	287^ALA 294^ASP 314^LYS 364^ARG 391^HIS 435^ALA	5.4.2.3		carbohydrate metabolic process	metal ion binding isomerase activity magnesium ion binding phosphoacetylglucosamine mutase activity intramolecular transferase activity phosphotransferases
1hrdB	[pdb]	1.46793 0.000805849	205^ARG 219^ALA 227^THR 248^LYS 403^HIS 408^ASP	1.4.1.2		oxidation reduction metabolic process cellular amino acid metabolic process	oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor oxidoreductase activity glutamate dehydrogenase activity binding catalytic activity
2o0vA	[pdb]	1.46804 0.000805851	110^ARG 161^ASP 206^ARG 218^LYS 221^HIS 303^SER	4.2.2.2		extracellular region	metal ion binding lyase activity calcium ion binding pectate lyase activity
1v5wB	[pdb]	1.47699 0.00084823	132^LYS 137^HIS 172^ASP 192^ARG 329^ALA 332^ALA		ATP binding DNA binding nucleotide binding nucleoside-triphosphatase activity DNA-dependent ATPase activity protein binding	intracellular membrane-bounded organelle cytoplasm nucleus condensed nuclear chromosome intracellular	meiosis cell cycle spermatogenesis female gamete generation reciprocal meiotic recombination DNA metabolic process gamete generation ovarian follicle development pachytene oocyte maturation male meiosis I spermatid development
2a7vA	[pdb]	1.50145 0.000920823	209^THR 213^ALA 264^LYS 362^ASP 364^HIS 418^ARG	2.1.2.1	glycine hydroxymethyltransferase activity transferase activity methyltransferase activity pyridoxal phosphate binding catalytic activity protein binding	mitochondrion mitochondrial matrix mitochondrial inner membrane mitochondrial nucleoid	one-carbon metabolic process L-serine metabolic process glycine metabolic process
2j5tD	[pdb]	1.53806 0.0010649	224^ALA 266^LYS 322^ASP 325^HIS 329^ARG 367^ARG	2.7.2.11	cellular amino acid biosynthetic process proline biosynthetic process	cytoplasm	transferase activity kinase activity glutamate 5-kinase activity RNA binding nucleotide binding ATP binding
1y7pA	[pdb]	1.55264 0.00113516	86^LYS 110^ARG 168^SER 171^ARG 202^HIS 212^ASP			amino acid binding	metabolic process
1zwxA	[pdb]	1.56003 0.00117361	68^ARG 259^ALA 270^LYS 277^ALA 282^ASP 325^HIS	3.1.4.12	extracellular region	hemolysis by symbiont of host erythrocytes cytolysis pathogenesis	hydrolase activity sphingomyelin phosphodiesterase activity phosphoric diester hydrolase activity
1ynfE	[pdb]	1.57809 0.00125802	111^ALA 135^LYS 177^ALA 208^ARG 248^HIS 250^ASP	3.5.3.23		hydrolase activity N-succinylarginine dihydrolase activity protein binding	response to stress arginine metabolic process arginine catabolic process to glutamate
3eanB	[pdb]	1.58968 0.00135148	198^ALA 206^ALA 215^ASP 235^LYS 243^HIS 416^ARG	0.0.0.0	electron carrier activity oxidoreductase activity selenium binding thioredoxin-disulfide reductase activity NADP or NADPH binding FAD binding	mesoderm formation response to oxidative stress gastrulation cell proliferation hydrogen peroxide catabolic process oxidation reduction cell redox homeostasis	nucleus cytosol cytoplasm
2cfyE	[pdb]	1.59875 0.00140054	198^ALA 206^ALA 215^ASP 235^LYS 243^HIS 416^ARG	1.8.1.9	cytoplasm nucleus cytosol	oxidation reduction electron transport chain transport signal transduction cell redox homeostasis hydrogen peroxide catabolic process cell proliferation gastrulation response to oxidative stress mesoderm formation	oxidoreductase activity selenium binding thioredoxin-disulfide reductase activity NADP or NADPH binding FAD binding protein disulfide oxidoreductase activity electron carrier activity
2v6oA	[pdb]	1.60238 0.00145231	294^ALA 302^ALA 311^ASP 331^LYS 339^HIS 515^ARG	0.0.0.0	cell redox homeostasis oxidation reduction	cytoplasm	thioredoxin-disulfide reductase activity FAD binding oxidoreductase activity protein disulfide oxidoreductase activity electron carrier activity NADP or NADPH binding
2hbvA	[pdb]	1.61346 0.00150762	119^ALA 127^ASP 129^ALA 166^HIS 217^ARG 223^LYS	0.0.0.0		catalytic activity	metabolic process
2hnhA	[pdb]	1.61455 0.00150768	10^ARG 12^HIS 38^ALA 52^LYS 201^ASP 506^ARG	2.7.7.7	DNA replication	cytoplasm	nucleotidyltransferase activity transferase activity DNA-directed DNA polymerase activity 3'-5' exonuclease activity catalytic activity DNA binding nucleic acid binding protein binding
3ce9D	[pdb]	1.61671 0.00156573	171^ASP 239^ALA 245^ALA 250^HIS 313^ARG 322^LYS	0.0.0.0		oxidation reduction aromatic amino acid family biosynthetic process	oxidoreductase activity acting on CH-OH group of donors metal ion binding 3-dehydroquinate synthase activity
2vdcE	[pdb]	1.63325 0.00169289	295^LEU 311^GLN 313^ALA 315^SER 322^ARG 402^GLU	1.4.1.13		cellular amino acid biosynthetic process glutamine metabolic process glutamate biosynthetic process metabolic process nitrogen compound metabolic process oxidation reduction oxidation reduction cellular amino acid biosynthetic process glutamate biosynthetic process	iron ion binding glutamate synthase (NADPH) activity oxidoreductase activity glutamate synthase activity catalytic activity 3 iron 4 sulfur cluster binding iron-sulfur cluster binding metal ion binding 4 iron 4 sulfur cluster binding iron-sulfur cluster binding metal ion binding oxidoreductase activity iron ion binding glutamate synthase (NADPH) activity FAD binding oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor electron carrier activity
2gjrA	[pdb]	1.64615 0.00183433	114^THR 156^LYS 161^HIS 163^ASP 204^ALA 219^ARG	3.2.1.98	extracellular region	metabolic process carbohydrate metabolic process	metal ion binding hydrolase activity acting on glycosyl bonds hydrolase activity glucan 1,4-alpha-maltohexaosidase activity cation binding calcium ion binding hydrolase activity hydrolyzing O-glycosyl compounds catalytic activity
2gl6G	[pdb]	1.64612 0.00183433	194^THR 202^ASP 204^ALA 209^LYS 220^ARG 253^HIS		creatine metabolic process muscle contraction	mitochondrial inner membrane membrane mitochondrion	transferase activity transferring phosphorus-containing groups transferase activity kinase activity ATP binding nucleotide binding creatine kinase activity catalytic activity
1xmqC	[pdb]	1.6472 0.00183441	54^LYS 56^MET 69^GLY 72^LEU 83^ARG 112^GLY		metal ion binding rRNA binding zinc ion binding RNA binding structural constituent of ribosome rRNA binding structural constituent of ribosome rRNA binding RNA binding structural constituent of ribosome tRNA binding rRNA binding RNA binding structural constituent of ribosome rRNA binding RNA binding structural constituent of ribosome rRNA binding RNA binding tRNA binding structural constituent of ribosome structural constituent of ribosome rRNA binding RNA binding structural constituent of ribosome rRNA binding RNA binding structural constituent of ribosome rRNA binding RNA binding structural constituent of ribosome rRNA binding RNA binding structural constituent of ribosome rRNA binding RNA binding structural constituent of ribosome metal ion binding rRNA binding zinc ion binding RNA binding structural constituent of ribosome rRNA binding RNA binding structural constituent of ribosome tRNA binding RNA binding rRNA binding RNA binding tRNA binding structural constituent of ribosome rRNA binding RNA binding rRNA binding RNA binding structural constituent of ribosome rRNA binding RNA binding structural constituent of ribosome metal ion binding rRNA binding zinc ion binding RNA binding structural constituent of ribosome rRNA binding RNA binding structural constituent of ribosome rRNA binding RNA binding tRNA binding structural constituent of ribosome nucleic acid binding rRNA binding RNA binding structural constituent of ribosome rRNA binding RNA binding structural constituent of ribosome rRNA binding RNA binding structural constituent of ribosome structural constituent of ribosome RNA binding tRNA binding rRNA binding RNA binding structural constituent of ribosome rRNA binding RNA binding structural constituent of ribosome rRNA binding RNA binding tRNA binding structural constituent of ribosome rRNA binding RNA binding structural constituent of ribosome rRNA binding RNA binding structural constituent of ribosome rRNA binding RNA binding rRNA binding RNA binding structural constituent of ribosome	ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome small ribosomal subunit intracellular ribonucleoprotein complex ribosome small ribosomal subunit intracellular ribonucleoprotein complex ribosome small ribosomal subunit intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome small ribosomal subunit intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome small ribosomal subunit intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome small ribosomal subunit intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome small ribosomal subunit intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome small ribosomal subunit intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome small ribosomal subunit intracellular ribonucleoprotein complex ribosome small ribosomal subunit intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome intracellular ribonucleoprotein complex ribosome ribonucleoprotein complex ribosome small ribosomal subunit intracellular	translation translation translation translation translation translation translation translation translation translation translation translation translation translation translation translation translation translation translation translation translation translation translation translation translation translation translation translation translation translation
1u4nA	[pdb]	1.65195 0.0019107	42^LYS 49^ARG 93^HIS 154^ASP 285^ALA 291^SER	0.0.0.0		hydrolase activity	metabolic process
2rgtB	[pdb]	1.66792 0.0020736	44^ARG 49^ALA 51^ASP 53^HIS 57^LYS 78^SER		neural crest cell migration multicellular organismal development mesenchymal cell differentiation neuron fate commitment positive regulation of transcription from RNA polymerase II promoter negative regulation of neuron differentiation retinal ganglion cell axon guidance pancreas development neuron differentiation visceral motor neuron differentiation spinal cord motor neuron differentiation heart development heart morphogenesis regulation of transcription regulation of transcription DNA-dependent regulation of transcription DNA-dependent transcription negative regulation of apoptosis cell differentiation pituitary gland development medial motor column neuron differentiation dorsal/ventral pattern formation motor axon guidance regulation of transcription pituitary gland development	nucleus nucleus intracellular intracellular intracellular part	transcription factor activity metal ion binding zinc ion binding DNA binding chromatin binding sequence-specific DNA binding transcription regulator activity protein binding metal ion binding zinc ion binding DNA binding sequence-specific DNA binding transcription regulator activity transcription factor activity
3dz1A	[pdb]	1.67481 0.002158	19^HIS 21^ASP 31^ARG 264^LYS 279^ARG 283^ALA	0.0.0.0		lyase activity catalytic activity	metabolic process
1rt8A	[pdb]	1.67621 0.00215813	231^ARG 323^ALA 334^ASP 336^ARG 350^LYS 358^HIS		actin cortical patch contractile ring cytoskeleton cytoplasm actin filament bundle	actin filament binding protein binding bridging actin binding calcium ion binding	actin filament bundle formation negative regulation of actin filament depolymerization ascospore formation actin cytoskeleton organization establishment or maintenance of cell polarity cytokinesis contractile ring formation cytokinesis cell morphogenesis actin cortical patch localization
2ayiC	[pdb]	1.67871 0.00215835	213^LYS 289^ALA 345^HIS 347^ALA 378^ASP 405^ARG	0.0.0.0		cobalt ion binding hydrolase activity metallopeptidase activity peptidase activity aminopeptidase activity	proteolysis
1gpjA	[pdb]	1.68624 0.00224689	168^LYS 197^ALA 208^ALA 219^ASP 224^HIS 257^ARG	1.2.1.70	cytoplasm	oxidation reduction porphyrin biosynthetic process tetrapyrrole biosynthetic process metabolic process	oxidoreductase activity glutamyl-tRNA reductase activity NADP or NADPH binding binding shikimate 5-dehydrogenase activity catalytic activity
1jmzA	[pdb]	1.6942 0.00233961	85^SER 189^ARG 195^PRO 197^VAL 261^LEU 307^ASP	0.0.0.0	heme binding electron carrier activity iron ion binding oxidoreductase activity oxidoreductase activity acting on the CH-NH2 group of donors	oxidation reduction electron transport chain transport	periplasmic space
1j2bB	[pdb]	1.69734 0.00243605	375^SER 385^LYS 401^HIS 409^ARG 422^ALA 424^ASP	0.0.0.0		metal ion binding transferase activity transferring glycosyl groups transferase activity zinc ion binding transferase activity transferring pentosyl groups queuine tRNA-ribosyltransferase activity RNA binding	tRNA processing queuosine biosynthetic process tRNA modification
1brwB	[pdb]	1.69919 0.00243623	1081^LYS 1231^ARG 1269^THR 1278^HIS 1290^ASP 1293^ARG	2.4.2.2		metabolic process pyrimidine nucleoside metabolic process pyrimidine base metabolic process	metal ion binding transferase activity transferring glycosyl groups transferase activity pyrimidine-nucleoside phosphorylase activity transferase activity transferring pentosyl groups
2qlzA	[pdb]	1.70078 0.00243639	14^ARG 16^ASP 20^HIS 43^ALA 73^LYS 151^ARG	0.0.0.0	intracellular	regulation of transcription DNA-dependent	transcription factor activity
1h9yB	[pdb]	1.7011 0.00243643	176^ALA 198^ALA 200^HIS 217^ASP 391^ARG 556^LYS	1.7.2.1, 1.7.99.1	metal ion binding oxidoreductase activity iron ion binding nitrite reductase (NO-forming) activity hydroxylamine reductase activity heme binding electron carrier activity	oxidation reduction electron transport chain transport	periplasmic space
1ufaA	[pdb]	1.7069 0.00253739	86^ARG 292^LYS 300^HIS 308^ALA 314^ALA 317^ASP	0.0.0.0		carbohydrate metabolic process	catalytic activity
3cymA	[pdb]	1.70886 0.00253759	38^SER 41^ALA 97^HIS 102^ASP 130^ARG 180^LYS	0.0.0.0	3'-5' exonuclease activity nucleic acid binding	intracellular	nucleobase nucleoside nucleotide and nucleic acid metabolic process
2axcA	[pdb]	1.71674 0.00275214	182^ASP 190^HIS 192^ALA 241^ARG 247^LYS 251^ALA	0.0.0.0	defense response to bacterium cytolysis pathogenesis	extrachromosomal circular DNA	metal ion binding hydrolase activity zinc ion binding receptor binding endonuclease activity nuclease activity nucleic acid binding protein binding
1ehyB	[pdb]	1.71966 0.00275247	64^ARG 159^ASP 161^ALA 167^SER 204^LYS 209^HIS	0.0.0.0	hydrolase activity epoxide hydrolase activity catalytic activity	membrane microsome	response to toxin
1mvwD	[pdb]	1.72004 0.00275251	170^ALA 217^CYS 253^GLU 259^GLU 263^GLN 264^PRO		motor activity calcium ion binding ATP binding actin binding motor activity nucleotide binding calmodulin binding protein binding ATP binding nucleotide binding calcium ion binding motor activity	myosin complex myosin complex striated muscle thick filament cytoplasm actin filament stress fiber striated muscle thin filament cytoskeleton cytoplasm myofibril myosin complex	striated muscle contraction muscle thin filament assembly skeletal muscle fiber development
1lp3A	[pdb]	1.72622 0.00286673	173^ARG 284^HIS 473^ASP 551^LYS 592^ARG 595^THR	0.0.0.0		structural molecule activity	virion viral capsid
1bl9A	[pdb]	1.72824 0.00286697	158^ALA 180^ALA 182^HIS 199^ASP 372^ARG 532^LYS	1.7.2.1, 1.7.99.1	metal ion binding oxidoreductase activity iron ion binding nitrite reductase (NO-forming) activity hydroxylamine reductase activity heme binding electron carrier activity	oxidation reduction electron transport chain transport	periplasmic space
2nq5A	[pdb]	1.72913 0.00286707	395^ARG 548^THR 571^LYS 608^ASP 610^ALA 612^HIS	2.1.1.14		metal ion binding transferase activity zinc ion binding methyltransferase activity 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity	methionine biosynthetic process cellular amino acid biosynthetic process
2dieA	[pdb]	1.72996 0.00286717	114^THR 156^LYS 161^HIS 163^ASP 204^ALA 218^ARG	0.0.0.0		carbohydrate metabolic process	cation binding calcium ion binding hydrolase activity hydrolyzing O-glycosyl compounds catalytic activity
2qa0A	[pdb]	1.73174 0.00298544	313^ARG 424^HIS 613^ASP 691^LYS 732^ARG 735^THR	0.0.0.0		structural molecule activity	viral capsid
2okkA	[pdb]	1.73192 0.00298547	255^ARG 334^ALA 349^ALA 358^LYS 362^HIS 364^ASP	4.1.1.15	cytoplasmic vesicle Golgi membrane synapse cell junction membrane plasma membrane Golgi apparatus cytoplasm perinuclear region of cytoplasm anchored to membrane synaptic vesicle membrane axon cytosol	neurotransmitter biosynthetic process synaptic transmission glutamate decarboxylation to succinate carboxylic acid metabolic process	protein binding carboxy-lyase activity lyase activity glutamate decarboxylase activity pyridoxal phosphate binding
1jroD	[pdb]	1.73488 0.00298583	420^ARG 454^LYS 529^ALA 649^HIS 660^ASP 727^ALA	0.0.0.0		oxidation reduction oxidation reduction	oxidoreductase activity iron-sulfur cluster binding FAD binding metal ion binding electron carrier activity xanthine oxidase activity xanthine dehydrogenase activity catalytic activity oxidoreductase activity electron carrier activity xanthine oxidase activity xanthine dehydrogenase activity FAD binding molybdenum ion binding iron ion binding 2 iron 2 sulfur cluster binding
2pwgA	[pdb]	1.73623 0.002986	65^ASP 104^HIS 143^SER 166^ARG 179^ARG 207^LYS	0.0.0.0		carbohydrate metabolic process	isomerase activity cation binding catalytic activity
2pgoB	[pdb]	1.73642 0.00298602	196^ARG 281^ARG 288^ALA 297^LYS 300^HIS 304^ASP
2g29A	[pdb]	1.73842 0.00310901	265^ASP 363^HIS 373^ARG 384^LYS 413^SER 416^ARG			nitrate assimilation transport	plasma membrane membrane
2qdsA	[pdb]	1.73997 0.00310921	121^ARG 196^HIS 224^LYS 238^ASP 241^ALA 299^ALA	3.5.2.6	metal ion binding hydrolase activity zinc ion binding beta-lactamase activity	periplasmic space	response to antibiotic antibiotic catabolic process
1ct9B	[pdb]	1.744 0.00310972	172^LYS 188^ARG 317^THR 381^HIS 384^ASP 386^ALA	6.3.5.4		cellular amino acid biosynthetic process glutamine metabolic process asparagine biosynthetic process metabolic process	nucleotide binding ATP binding ligase activity asparagine synthase (glutamine-hydrolyzing) activity
3c9fA	[pdb]	1.74655 0.00323518	34^ASP 81^ARG 98^SER 115^HIS 124^LYS 188^ARG	0.0.0.0			hydrolase activity
2apcA	[pdb]	1.7472 0.00323526	318^ARG 330^HIS 335^LYS 408^ASP 415^ARG 423^THR	2.4.1.101	Golgi membrane integral to membrane membrane Golgi apparatus	protein amino acid N-linked glycosylation	transferase activity transferring glycosyl groups transferase activity alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity
1m53A	[pdb]	1.74866 0.00323545	106^ASP 145^HIS 184^SER 207^ARG 220^ARG 248^LYS	0.0.0.0		carbohydrate metabolic process	cation binding catalytic activity
2v7oA	[pdb]	1.75234 0.00323592	66^ARG 114^SER 126^HIS 154^LYS 263^ALA 264^ASP	2.7.11.17	calmodulin binding ATP binding calcium-dependent protein serine/threonine phosphatase activity transferase activity kinase activity protein serine/threonine kinase activity nucleotide binding calmodulin-dependent protein kinase activity protein kinase activity	cellular_component calcium- and calmodulin-dependent protein kinase complex	insulin secretion protein amino acid phosphorylation protein amino acid autophosphorylation G1/S transition of mitotic cell cycle calcium ion transport
2pdaA	[pdb]	1.75565 0.00336398	175^ARG 435^LYS 467^HIS 485^ASP 565^THR 571^ALA	0.0.0.0		iron-sulfur cluster binding thiamin pyrophosphate binding oxidoreductase activity acting on the aldehyde or oxo group of donors oxidoreductase activity electron carrier activity iron ion binding catalytic activity metal ion binding 4 iron 4 sulfur cluster binding	metabolic process oxidation reduction
1v34A	[pdb]	1.76642 0.0034981	73^SER 140^ASP 142^HIS 153^ARG 306^LYS 317^ARG		alpha DNA polymerase:primase complex	metal ion binding nucleotidyltransferase activity transferase activity zinc ion binding DNA-directed RNA polymerase activity DNA primase activity	transcription DNA replication synthesis of RNA primer DNA replication
2faqA	[pdb]	1.77336 0.00363694	544^ALA 566^LYS 573^HIS 578^ASP 636^ALA 776^ARG	0.0.0.0		DNA recombination DNA repair DNA replication synthesis of RNA primer DNA replication	ligase activity ATP binding DNA ligase (ATP) activity DNA primase activity
2cn2A	[pdb]	1.77468 0.00378039	179^ARG 247^LYS 274^HIS 317^THR 331^ALA 414^ASP	0.0.0.0		hydrolase activity hydrolase activity hydrolyzing O-glycosyl compounds	polysaccharide catabolic process carbohydrate metabolic process
2pplA	[pdb]	1.77505 0.00378044	194^ASP 256^LYS 274^ARG 281^HIS 283^ARG 347^THR	3.1.1.3	extracellular region	hydrolase activity triacylglycerol lipase activity catalytic activity	lipid catabolic process lipid metabolic process
3b9tA	[pdb]	1.77613 0.0037806	319^ARG 427^ASP 430^ARG 447^ALA 470^HIS 474^LYS	0.0.0.0		hydrolase activity acting on carbon-nitrogen (but not peptide) bonds in linear amides	metabolic process
3mdsA	[pdb]	1.77642 0.00378065	5^LYS 43^ALA 74^ARG 80^HIS 88^ARG 152^ASP	1.15.1.1		metal ion binding manganese ion binding oxidoreductase activity superoxide dismutase activity	oxidation reduction superoxide metabolic process
1zy9A	[pdb]	1.77868 0.00378099	117^SER 166^LYS 177^ALA 380^ASP 418^HIS 484^ARG	0.0.0.0		hydrolase activity acting on glycosyl bonds hydrolase activity alpha-galactosidase activity hydrolase activity hydrolyzing O-glycosyl compounds catalytic activity	metabolic process carbohydrate metabolic process
2oajA	[pdb]	1.78612 0.00393102	73^LYS 499^ARG 520^ARG 526^HIS 528^ASP 894^ALA		Rab GTPase binding SNARE binding	establishment of cell polarity small GTPase mediated signal transduction Golgi to plasma membrane transport exocytosis	plasma membrane cytosol
1s6mA	[pdb]	1.78872 0.00393142	92^LYS 109^ALA 111^ASP 156^ARG 161^HIS 201^ALA	0.0.0.0
2nlyA	[pdb]	1.78924 0.0040863	39^ASP 61^ALA 70^THR 86^HIS 119^LYS 146^ARG	0.0.0.0
1f1aA	[pdb]	1.79001 0.00408643	8^LYS 38^SER 43^ARG 115^ARG 120^HIS 124^ASP	1.15.1.1	metal ion binding oxidoreductase activity antioxidant activity zinc ion binding copper ion binding superoxide dismutase activity	nucleus mitochondrial intermembrane space cytoplasm mitochondrion cytosol	positive regulation of transcription factor activity oxidation reduction response to drug response to cold cellular zinc ion homeostasis cellular copper ion homeostasis superoxide metabolic process age-dependent response to reactive oxygen species during chronological cell aging
1mf0A	[pdb]	1.79297 0.00408691	141^HIS 143^ALA 145^ASP 181^ARG 197^LYS 209^THR	6.3.4.4	AMP biosynthetic process purine nucleotide biosynthetic process purine nucleotide metabolic process	membrane cytoplasm	metal ion binding ligase activity GTP binding magnesium ion binding nucleotide binding adenylosuccinate synthase activity protein binding
1n6fF	[pdb]	1.79594 0.00408739	141^ASP 182^HIS 190^ARG 212^LYS 221^ALA 276^ARG		cytoplasm	hydrolase activity serine-type peptidase activity peptidase activity protein binding	proteolysis
1f0lA	[pdb]	1.79975 0.00424905	374^SER 417^ASP 449^HIS 462^ARG 474^LYS 485^ALA	2.4.2.36	extracellular region	pathogenesis	transferase activity transferring glycosyl groups transferase activity NAD+-diphthamide ADP-ribosyltransferase activity
4tmkA	[pdb]	1.80192 0.00424942	16^LYS 107^ALA 178^ALA 181^ASP 185^HIS 201^ARG	2.7.4.9		nucleotide biosynthetic process dTDP biosynthetic process dTTP biosynthetic process	transferase activity kinase activity ATP binding nucleotide binding thymidylate kinase activity
1wl7A	[pdb]	1.8059 0.00441771	147^ASP 199^ALA 202^ALA 230^LYS 271^HIS 301^ARG	0.0.0.0		carbohydrate metabolic process	hydrolase activity hydrolyzing O-glycosyl compounds
2eg7A	[pdb]	1.80633 0.00441778	18^HIS 26^LYS 59^ARG 250^ASP 271^ALA 324^SER	3.5.2.3		metal ion binding hydrolase activity zinc ion binding dihydroorotase activity hydrolase activity acting on carbon-nitrogen (but not peptide) bonds in cyclic amides	pyrimidine nucleotide biosynthetic process pyrimidine base biosynthetic process
2nteB	[pdb]	1.80728 0.00441795	659^ARG 670^LYS 719^THR 723^HIS 727^ASP 731^ARG	0.0.0.0	BRCA1-A complex BRCA1-BARD1 complex ubiquitin ligase complex nucleus cytoplasm intracellular	DNA repair modification-dependent protein catabolic process cell cycle arrest positive regulation of apoptosis regulation of phosphorylation tissue homeostasis protein ubiquitination positive regulation of protein catabolic process negative regulation of protein export from nucleus negative regulation of mRNA 3'-end processing response to DNA damage stimulus negative regulation of apoptosis	ligase activity RNA binding protein binding kinase binding ubiquitin-protein ligase activity protein heterodimerization activity protein homodimerization activity metal ion binding zinc ion binding
1ckiB	[pdb]	1.81019 0.00441846	123^HIS 159^LYS 165^ARG 198^ARG 203^SER 270^ASP	2.7.11.1	Wnt receptor signaling pathway protein amino acid phosphorylation mitotic cell cycle	cytoplasm soluble fraction centrosome spindle	transferase activity kinase activity ATP binding protein serine/threonine kinase activity nucleotide binding protein kinase activity glycoprotein binding protein binding peptide binding phosphoprotein binding
2ghsA	[pdb]	1.81315 0.00459356	94^ALA 117^SER 126^ASP 153^HIS 158^LYS 199^ARG	0.0.0.0
1rp1A	[pdb]	1.81884 0.00477656	176^ASP 238^LYS 256^ARG 263^HIS 265^ARG 329^THR	3.1.1.3	extracellular region	hydrolase activity triacylglycerol lipase activity catalytic activity	lipid catabolic process lipid metabolic process
1h4jG	[pdb]	1.82043 0.00477686	283^ARG 324^LYS 328^HIS 330^ASP 348^ALA 462^THR	1.1.99.8	calcium ion binding alcohol dehydrogenase (acceptor) activity oxidoreductase activity acting on CH-OH group of donors electron carrier activity metal ion binding oxidoreductase activity oxidoreductase activity alcohol dehydrogenase (acceptor) activity alcohol dehydrogenase (NAD) activity	membrane plasma membrane outer membrane-bounded periplasmic space periplasmic space	methanol metabolic process oxidation reduction oxidation reduction methanol metabolic process methanol oxidation
1uirA	[pdb]	1.82544 0.00496359	75^HIS 79^LYS 183^ALA 239^ALA 244^ASP 260^ARG	2.5.1.16		spermidine biosynthetic process polyamine biosynthetic process	transferase activity spermidine synthase activity catalytic activity spermidine synthase activity catalytic activity
1c7gD	[pdb]	1.82587 0.00496367	50^ASP 309^ALA 320^LYS 330^ARG 343^HIS 409^ARG	4.1.99.2	aromatic amino acid family metabolic process cellular amino acid metabolic process	cytoplasm	lyase activity tyrosine phenol-lyase activity pyridoxal phosphate binding carbon-carbon lyase activity catalytic activity
2ch5A	[pdb]	1.8326 0.00515482	152^ASP 156^ALA 161^HIS 197^ARG 219^LYS 275^SER	2.7.1.59	N-acetylmannosamine metabolic process N-acetylglucosamine metabolic process	soluble fraction	transferase activity kinase activity ATP binding nucleotide binding N-acetylglucosamine kinase activity protein binding N-acylmannosamine kinase activity
1p49A	[pdb]	1.83655 0.00515561	66^THR 436^ARG 438^ASP 456^HIS 507^LYS 522^ARG	3.1.6.2	endoplasmic reticulum membrane integral to membrane membrane endoplasmic reticulum plasma membrane Golgi apparatus microsome endosome lysosome membrane fraction	metal ion binding hydrolase activity calcium ion binding steryl-sulfatase activity sulfuric ester hydrolase activity catalytic activity	steroid metabolic process female pregnancy lipid metabolic process epidermis development steroid catabolic process metabolic process
2jl9C	[pdb]	1.85001 0.00556368	49^ARG 89^HIS 209^ASP 246^SER 253^LYS 268^ARG	0.0.0.0	metal ion binding manganese ion binding nucleotidyltransferase activity transferase activity RNA-directed RNA polymerase activity magnesium ion binding nucleotide binding RNA binding	transcription RNA-dependent viral genome replication transcription	virion
1qr0A	[pdb]	1.85055 0.0055638	67^ARG 75^LYS 85^HIS 98^ALA 100^ASP 152^SER			antibiotic biosynthetic process macromolecule biosynthetic process fatty acid biosynthetic process	metal ion binding transferase activity magnesium ion binding holo-[acyl-carrier-protein] synthase activity
3eafA	[pdb]	1.85106 0.00556391	155^LYS 360^ALA 367^ALA 381^ASP 387^HIS 420^ARG	0.0.0.0
1wkuA	[pdb]	1.85403 0.00556456	171^LYS 176^ARG 198^HIS 201^ARG 203^ASP 266^ALA	0.0.0.0	focal adhesion formation regulation of apoptosis	protein homodimerization activity integrin binding protein binding calcium ion binding actin binding structural constituent of muscle	pseudopodium actin filament focal adhesion
2d3lA	[pdb]	1.85553 0.00578136	114^THR 156^LYS 161^HIS 163^ASP 204^ALA 218^ARG	3.2.1.98	extracellular region	metabolic process carbohydrate metabolic process	metal ion binding hydrolase activity acting on glycosyl bonds hydrolase activity glucan 1,4-alpha-maltohexaosidase activity cation binding calcium ion binding hydrolase activity hydrolyzing O-glycosyl compounds catalytic activity
1c9wA	[pdb]	1.85718 0.00578174	10^ALA 149^ASP 155^ALA 168^ARG 177^HIS 202^LYS	1.1.1.21	cytoplasm	oxidation reduction	oxidoreductase activity aldehyde reductase activity
2fgyA	[pdb]	1.8587 0.00578208	197^LYS 242^HIS 260^ASP 263^ALA 269^THR 414^ARG	0.0.0.0
2gjxF	[pdb]	1.86199 0.00600928	230^VAL 516^PRO 525^GLU 527^GLU 532^NAG 539^HOH	3.2.1.52	hydrolase activity acting on glycosyl bonds hydrolase activity beta-N-acetylhexosaminidase activity protein heterodimerization activity cation binding catalytic activity protein binding hydrolase activity acting on glycosyl bonds hydrolase activity beta-N-acetylhexosaminidase activity protein heterodimerization activity protein homodimerization activity cation binding catalytic activity hydrolase activity hydrolyzing O-glycosyl compounds hydrolase activity hydrolyzing O-glycosyl compounds	lysosome membrane lysosome membrane acrosomal vesicle	metabolic process carbohydrate metabolic process neuromuscular process controlling balance neuromuscular process controlling posture myelination glycosaminoglycan metabolic process sexual reproduction lipid storage adult walking behavior locomotory behavior sensory perception of sound lysosome organization ganglioside catabolic process skeletal system development metabolic process carbohydrate metabolic process neuromuscular process neuromuscular process controlling balance oogenesis cellular protein metabolic process myelination regulation of cellular metabolic process glycosaminoglycan metabolic process sexual reproduction lipid storage oligosaccharide catabolic process phospholipid biosynthetic process male courtship behavior locomotory behavior sensory perception of sound penetration of zona pellucida single fertilization lysosome organization cellular calcium ion homeostasis ganglioside catabolic process glycosphingolipid metabolic process skeletal system development
1w1tB	[pdb]	1.86212 0.00600931	215^ASP 226^HIS 228^ALA 269^ALA 357^ARG 362^LYS	0.0.0.0	extracellular region	hydrolase activity hydrolase activity acting on glycosyl bonds cation binding carbohydrate binding chitinase activity hydrolase activity hydrolyzing O-glycosyl compounds catalytic activity	metabolic process chitin catabolic process carbohydrate metabolic process
3cpnA	[pdb]	1.86335 0.0060096	135^ASP 199^ALA 226^THR 248^LYS 260^HIS 279^ARG	0.0.0.0		carbohydrate metabolic process	hydrolase activity hydrolase activity hydrolyzing O-glycosyl compounds

PDB ID

LRMSD /
p-value

Matching Residues

Gene Ontology annotations

Biological Process

Cellular Component

Molecular Function

1epzA

[pdb]

0.131473
2.45944e-05

53^SER 61^ARG 64^HIS 73^LYS 90^ARG 172^ASP

0.0.0.0

dTDP-4-dehydrorhamnose 3,5-epimerase activity

lipopolysaccharide biosynthetic process

1dztB

[pdb]

0.369861
9.24234e-05

52^SER 60^ARG 63^HIS 73^LYS 90^ARG 170^ASP

5.1.3.13

isomerase activity
dTDP-4-dehydrorhamnose 3,5-epimerase activity

lipopolysaccharide biosynthetic process

2ixiB

[pdb]

0.421036
0.000116155

51^SER 59^ARG 62^HIS 71^LYS 88^ARG 168^ASP

0.0.0.0

dTDP-4-dehydrorhamnose 3,5-epimerase activity

lipopolysaccharide biosynthetic process

1upiA

[pdb]

0.577257
0.000200785

51^SER 59^ARG 62^HIS 72^LYS 89^ARG 171^ASP

0.0.0.0

isomerase activity
dTDP-4-dehydrorhamnose 3,5-epimerase activity

lipopolysaccharide biosynthetic process

2b9uG

[pdb]

0.643839
0.000248479

50^SER 58^ARG 61^HIS 71^LYS 88^ARG 163^ASP

0.0.0.0

dTDP-4-dehydrorhamnose 3,5-epimerase activity

lipopolysaccharide biosynthetic process

1nxmB

[pdb]

0.713829
0.000306063

65^SER 73^ARG 76^HIS 82^LYS 100^ARG 180^ASP

0.0.0.0

isomerase activity
dTDP-4-dehydrorhamnose 3,5-epimerase activity

lipopolysaccharide biosynthetic process

1wa4A

[pdb]

0.74558
0.000338293

52^SER 60^ARG 63^HIS 73^LYS 90^ARG 170^ASP

0.0.0.0

dTDP-4-dehydrorhamnose 3,5-epimerase activity

lipopolysaccharide biosynthetic process

2c0zA

[pdb]

0.746442
0.000338298

51^SER 59^ARG 62^HIS 72^LYS 89^ARG 168^ASP

0.0.0.0

dTDP-4-dehydrorhamnose 3,5-epimerase activity

lipopolysaccharide biosynthetic process

2glfB

[pdb]

1.32514
0.000535036

32^ALA 73^LYS 94^HIS 256^ALA 293^ARG 328^ASP

0.0.0.0

metal ion binding
hydrolase activity
zinc ion binding
metallopeptidase activity
peptidase activity
aminopeptidase activity

proteolysis

vacuole

1md9A

[pdb]

1.3271
0.000535055

34^ARG 183^ASP 202^ARG 204^HIS 212^LYS 388^THR

cytoplasm

ligase activity
ATP binding
nucleotide binding
(2,3-dihydroxybenzoyl)adenylate synthase activity
catalytic activity

metabolic process
siderophore biosynthetic process

2qyvA

[pdb]

1.36964
0.000599679

28^LYS 49^ARG 76^HIS 111^THR 114^ALA 169^ASP

0.0.0.0

dipeptidase activity
hydrolase activity
protein dimerization activity
metallopeptidase activity

proteolysis

1ti8A

[pdb]

1.37092
0.000599695

131^GLU 183^HIS 193^LYS 219^ALA 229^ARG 231^ASP

0.0.0.0

host cell surface receptor binding
host cell surface receptor binding

viral envelope fusion with host membrane
viral envelope fusion with host membrane

virion membrane
apical plasma membrane
viral envelope
virion
integral to membrane
membrane
plasma membrane
virion membrane
apical plasma membrane
viral envelope
virion
integral to membrane
membrane
plasma membrane

2dkcB

[pdb]

1.38567
0.000625109

287^ALA 294^ASP 314^LYS 364^ARG 391^HIS 435^ALA

5.4.2.3

carbohydrate metabolic process

metal ion binding
isomerase activity
magnesium ion binding
phosphoacetylglucosamine mutase activity
intramolecular transferase activity
phosphotransferases

1hrdB

[pdb]

1.46793
0.000805849

205^ARG 219^ALA 227^THR 248^LYS 403^HIS 408^ASP

1.4.1.2

oxidation reduction
metabolic process
cellular amino acid metabolic process

oxidoreductase activity
acting on the CH-NH2 group of donors
NAD or NADP as acceptor
oxidoreductase activity
glutamate dehydrogenase activity
binding
catalytic activity

2o0vA

[pdb]

1.46804
0.000805851

110^ARG 161^ASP 206^ARG 218^LYS 221^HIS 303^SER

4.2.2.2

extracellular region

metal ion binding
lyase activity
calcium ion binding
pectate lyase activity

1v5wB

[pdb]

1.47699
0.00084823

132^LYS 137^HIS 172^ASP 192^ARG 329^ALA 332^ALA

ATP binding
DNA binding
nucleotide binding
nucleoside-triphosphatase activity
DNA-dependent ATPase activity
protein binding

intracellular membrane-bounded organelle
cytoplasm
nucleus
condensed nuclear chromosome
intracellular

meiosis
cell cycle
spermatogenesis
female gamete generation
reciprocal meiotic recombination
DNA metabolic process
gamete generation
ovarian follicle development
pachytene
oocyte maturation
male meiosis I
spermatid development

2a7vA

[pdb]

1.50145
0.000920823

209^THR 213^ALA 264^LYS 362^ASP 364^HIS 418^ARG

2.1.2.1

glycine hydroxymethyltransferase activity
transferase activity
methyltransferase activity
pyridoxal phosphate binding
catalytic activity
protein binding

mitochondrion
mitochondrial matrix
mitochondrial inner membrane
mitochondrial nucleoid

one-carbon metabolic process
L-serine metabolic process
glycine metabolic process

2j5tD

[pdb]

1.53806
0.0010649

224^ALA 266^LYS 322^ASP 325^HIS 329^ARG 367^ARG

2.7.2.11

cellular amino acid biosynthetic process
proline biosynthetic process

cytoplasm

transferase activity
kinase activity
glutamate 5-kinase activity
RNA binding
nucleotide binding
ATP binding

1y7pA

[pdb]

1.55264
0.00113516

86^LYS 110^ARG 168^SER 171^ARG 202^HIS 212^ASP

amino acid binding

metabolic process

1zwxA

[pdb]

1.56003
0.00117361

68^ARG 259^ALA 270^LYS 277^ALA 282^ASP 325^HIS

3.1.4.12

extracellular region

hemolysis by symbiont of host erythrocytes
cytolysis
pathogenesis

hydrolase activity
sphingomyelin phosphodiesterase activity
phosphoric diester hydrolase activity

1ynfE

[pdb]

1.57809
0.00125802

111^ALA 135^LYS 177^ALA 208^ARG 248^HIS 250^ASP

3.5.3.23

hydrolase activity
N-succinylarginine dihydrolase activity
protein binding

response to stress
arginine metabolic process
arginine catabolic process to glutamate

3eanB

[pdb]

1.58968
0.00135148

198^ALA 206^ALA 215^ASP 235^LYS 243^HIS 416^ARG

0.0.0.0

electron carrier activity
oxidoreductase activity
selenium binding
thioredoxin-disulfide reductase activity
NADP or NADPH binding
FAD binding

mesoderm formation
response to oxidative stress
gastrulation
cell proliferation
hydrogen peroxide catabolic process
oxidation reduction
cell redox homeostasis

nucleus
cytosol
cytoplasm

2cfyE

[pdb]

1.59875
0.00140054

198^ALA 206^ALA 215^ASP 235^LYS 243^HIS 416^ARG

1.8.1.9

cytoplasm
nucleus
cytosol

oxidation reduction
electron transport chain
transport
signal transduction
cell redox homeostasis
hydrogen peroxide catabolic process
cell proliferation
gastrulation
response to oxidative stress
mesoderm formation

oxidoreductase activity
selenium binding
thioredoxin-disulfide reductase activity
NADP or NADPH binding
FAD binding
protein disulfide oxidoreductase activity
electron carrier activity

2v6oA

[pdb]

1.60238
0.00145231

294^ALA 302^ALA 311^ASP 331^LYS 339^HIS 515^ARG

0.0.0.0

cell redox homeostasis
oxidation reduction

cytoplasm

thioredoxin-disulfide reductase activity
FAD binding
oxidoreductase activity
protein disulfide oxidoreductase activity
electron carrier activity
NADP or NADPH binding

2hbvA

[pdb]

1.61346
0.00150762

119^ALA 127^ASP 129^ALA 166^HIS 217^ARG 223^LYS

0.0.0.0

catalytic activity

metabolic process

2hnhA

[pdb]

1.61455
0.00150768

10^ARG 12^HIS 38^ALA 52^LYS 201^ASP 506^ARG

2.7.7.7

DNA replication

cytoplasm

nucleotidyltransferase activity
transferase activity
DNA-directed DNA polymerase activity
3'-5' exonuclease activity
catalytic activity
DNA binding
nucleic acid binding
protein binding

3ce9D

[pdb]

1.61671
0.00156573

171^ASP 239^ALA 245^ALA 250^HIS 313^ARG 322^LYS

0.0.0.0

oxidation reduction
aromatic amino acid family biosynthetic process

oxidoreductase activity
acting on CH-OH group of donors
metal ion binding
3-dehydroquinate synthase activity

2vdcE

[pdb]

1.63325
0.00169289

295^LEU 311^GLN 313^ALA 315^SER 322^ARG 402^GLU

1.4.1.13

cellular amino acid biosynthetic process
glutamine metabolic process
glutamate biosynthetic process
metabolic process
nitrogen compound metabolic process
oxidation reduction
oxidation reduction
cellular amino acid biosynthetic process
glutamate biosynthetic process

iron ion binding
glutamate synthase (NADPH) activity
oxidoreductase activity
glutamate synthase activity
catalytic activity
3 iron
4 sulfur cluster binding
iron-sulfur cluster binding
metal ion binding
4 iron
4 sulfur cluster binding
iron-sulfur cluster binding
metal ion binding
oxidoreductase activity
iron ion binding
glutamate synthase (NADPH) activity
FAD binding
oxidoreductase activity
acting on the CH-NH2 group of donors
NAD or NADP as acceptor
electron carrier activity

2gjrA

[pdb]

1.64615
0.00183433

114^THR 156^LYS 161^HIS 163^ASP 204^ALA 219^ARG

3.2.1.98

extracellular region

metabolic process
carbohydrate metabolic process

metal ion binding
hydrolase activity
acting on glycosyl bonds
hydrolase activity
glucan 1,4-alpha-maltohexaosidase activity
cation binding
calcium ion binding
hydrolase activity
hydrolyzing O-glycosyl compounds
catalytic activity

2gl6G

[pdb]

1.64612
0.00183433

194^THR 202^ASP 204^ALA 209^LYS 220^ARG 253^HIS

creatine metabolic process
muscle contraction

mitochondrial inner membrane
membrane
mitochondrion

transferase activity
transferring phosphorus-containing groups
transferase activity
kinase activity
ATP binding
nucleotide binding
creatine kinase activity
catalytic activity

1xmqC

[pdb]

1.6472
0.00183441

54^LYS 56^MET 69^GLY 72^LEU 83^ARG 112^GLY

metal ion binding
rRNA binding
zinc ion binding
RNA binding
structural constituent of ribosome
rRNA binding
structural constituent of ribosome
rRNA binding
RNA binding
structural constituent of ribosome
tRNA binding
rRNA binding
RNA binding
structural constituent of ribosome
rRNA binding
RNA binding
structural constituent of ribosome
rRNA binding
RNA binding
tRNA binding
structural constituent of ribosome
structural constituent of ribosome
rRNA binding
RNA binding
structural constituent of ribosome
rRNA binding
RNA binding
structural constituent of ribosome
rRNA binding
RNA binding
structural constituent of ribosome
rRNA binding
RNA binding
structural constituent of ribosome
rRNA binding
RNA binding
structural constituent of ribosome
metal ion binding
rRNA binding
zinc ion binding
RNA binding
structural constituent of ribosome
rRNA binding
RNA binding
structural constituent of ribosome
tRNA binding
RNA binding
rRNA binding
RNA binding
tRNA binding
structural constituent of ribosome
rRNA binding
RNA binding
rRNA binding
RNA binding
structural constituent of ribosome
rRNA binding
RNA binding
structural constituent of ribosome
metal ion binding
rRNA binding
zinc ion binding
RNA binding
structural constituent of ribosome
rRNA binding
RNA binding
structural constituent of ribosome
rRNA binding
RNA binding
tRNA binding
structural constituent of ribosome
nucleic acid binding
rRNA binding
RNA binding
structural constituent of ribosome
rRNA binding
RNA binding
structural constituent of ribosome
rRNA binding
RNA binding
structural constituent of ribosome
structural constituent of ribosome
RNA binding
tRNA binding
rRNA binding
RNA binding
structural constituent of ribosome
rRNA binding
RNA binding
structural constituent of ribosome
rRNA binding
RNA binding
tRNA binding
structural constituent of ribosome
rRNA binding
RNA binding
structural constituent of ribosome
rRNA binding
RNA binding
structural constituent of ribosome
rRNA binding
RNA binding
rRNA binding
RNA binding
structural constituent of ribosome

ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
small ribosomal subunit
intracellular
ribonucleoprotein complex
ribosome
small ribosomal subunit
intracellular
ribonucleoprotein complex
ribosome
small ribosomal subunit
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
small ribosomal subunit
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
small ribosomal subunit
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
small ribosomal subunit
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
small ribosomal subunit
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
small ribosomal subunit
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
small ribosomal subunit
intracellular
ribonucleoprotein complex
ribosome
small ribosomal subunit
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
intracellular
ribonucleoprotein complex
ribosome
ribonucleoprotein complex
ribosome
small ribosomal subunit
intracellular

translation
translation
translation
translation
translation
translation
translation
translation
translation
translation
translation
translation
translation
translation
translation
translation
translation
translation
translation
translation
translation
translation
translation
translation
translation
translation
translation
translation
translation
translation

1u4nA

[pdb]

1.65195
0.0019107

42^LYS 49^ARG 93^HIS 154^ASP 285^ALA 291^SER

0.0.0.0

hydrolase activity

metabolic process

2rgtB

[pdb]

1.66792
0.0020736

44^ARG 49^ALA 51^ASP 53^HIS 57^LYS 78^SER

neural crest cell migration
multicellular organismal development
mesenchymal cell differentiation
neuron fate commitment
positive regulation of transcription from RNA polymerase II promoter
negative regulation of neuron differentiation
retinal ganglion cell axon guidance
pancreas development
neuron differentiation
visceral motor neuron differentiation
spinal cord motor neuron differentiation
heart development
heart morphogenesis
regulation of transcription
regulation of transcription
DNA-dependent
regulation of transcription
DNA-dependent
transcription
negative regulation of apoptosis
cell differentiation
pituitary gland development
medial motor column neuron differentiation
dorsal/ventral pattern formation
motor axon guidance
regulation of transcription
pituitary gland development

nucleus
nucleus
intracellular
intracellular
intracellular part

transcription factor activity
metal ion binding
zinc ion binding
DNA binding
chromatin binding
sequence-specific DNA binding
transcription regulator activity
protein binding
metal ion binding
zinc ion binding
DNA binding
sequence-specific DNA binding
transcription regulator activity
transcription factor activity

3dz1A

[pdb]

1.67481
0.002158

19^HIS 21^ASP 31^ARG 264^LYS 279^ARG 283^ALA

0.0.0.0

lyase activity
catalytic activity

metabolic process

1rt8A

[pdb]

1.67621
0.00215813

231^ARG 323^ALA 334^ASP 336^ARG 350^LYS 358^HIS

actin cortical patch
contractile ring
cytoskeleton
cytoplasm
actin filament bundle

actin filament binding
protein binding
bridging
actin binding
calcium ion binding

actin filament bundle formation
negative regulation of actin filament depolymerization
ascospore formation
actin cytoskeleton organization
establishment or maintenance of cell polarity
cytokinesis
contractile ring formation
cytokinesis
cell morphogenesis
actin cortical patch localization

2ayiC

[pdb]

1.67871
0.00215835

213^LYS 289^ALA 345^HIS 347^ALA 378^ASP 405^ARG

0.0.0.0

cobalt ion binding
hydrolase activity
metallopeptidase activity
peptidase activity
aminopeptidase activity

proteolysis

1gpjA

[pdb]

1.68624
0.00224689

168^LYS 197^ALA 208^ALA 219^ASP 224^HIS 257^ARG

1.2.1.70

cytoplasm

oxidation reduction
porphyrin biosynthetic process
tetrapyrrole biosynthetic process
metabolic process

oxidoreductase activity
glutamyl-tRNA reductase activity
NADP or NADPH binding
binding
shikimate 5-dehydrogenase activity
catalytic activity

1jmzA

[pdb]

1.6942
0.00233961

85^SER 189^ARG 195^PRO 197^VAL 261^LEU 307^ASP

0.0.0.0

heme binding
electron carrier activity
iron ion binding
oxidoreductase activity
oxidoreductase activity
acting on the CH-NH2 group of donors

oxidation reduction
electron transport chain
transport

periplasmic space

1j2bB

[pdb]

1.69734
0.00243605

375^SER 385^LYS 401^HIS 409^ARG 422^ALA 424^ASP

0.0.0.0

metal ion binding
transferase activity
transferring glycosyl groups
transferase activity
zinc ion binding
transferase activity
transferring pentosyl groups
queuine tRNA-ribosyltransferase activity
RNA binding

tRNA processing
queuosine biosynthetic process
tRNA modification

1brwB

[pdb]

1.69919
0.00243623

1081^LYS 1231^ARG 1269^THR 1278^HIS 1290^ASP 1293^ARG

2.4.2.2

metabolic process
pyrimidine nucleoside metabolic process
pyrimidine base metabolic process

metal ion binding
transferase activity
transferring glycosyl groups
transferase activity
pyrimidine-nucleoside phosphorylase activity
transferase activity
transferring pentosyl groups

2qlzA

[pdb]

1.70078
0.00243639

14^ARG 16^ASP 20^HIS 43^ALA 73^LYS 151^ARG

0.0.0.0

intracellular

regulation of transcription
DNA-dependent

transcription factor activity

1h9yB

[pdb]

1.7011
0.00243643

176^ALA 198^ALA 200^HIS 217^ASP 391^ARG 556^LYS

1.7.2.1, 1.7.99.1

metal ion binding
oxidoreductase activity
iron ion binding
nitrite reductase (NO-forming) activity
hydroxylamine reductase activity
heme binding
electron carrier activity

oxidation reduction
electron transport chain
transport

periplasmic space

1ufaA

[pdb]

1.7069
0.00253739

86^ARG 292^LYS 300^HIS 308^ALA 314^ALA 317^ASP

0.0.0.0

carbohydrate metabolic process

catalytic activity

3cymA

[pdb]

1.70886
0.00253759

38^SER 41^ALA 97^HIS 102^ASP 130^ARG 180^LYS

0.0.0.0

3'-5' exonuclease activity
nucleic acid binding

intracellular

nucleobase
nucleoside
nucleotide and nucleic acid metabolic process

2axcA

[pdb]

1.71674
0.00275214

182^ASP 190^HIS 192^ALA 241^ARG 247^LYS 251^ALA

0.0.0.0

defense response to bacterium
cytolysis
pathogenesis

extrachromosomal circular DNA

metal ion binding
hydrolase activity
zinc ion binding
receptor binding
endonuclease activity
nuclease activity
nucleic acid binding
protein binding

1ehyB

[pdb]

1.71966
0.00275247

64^ARG 159^ASP 161^ALA 167^SER 204^LYS 209^HIS

0.0.0.0

hydrolase activity
epoxide hydrolase activity
catalytic activity

membrane
microsome

response to toxin

1mvwD

[pdb]

1.72004
0.00275251

170^ALA 217^CYS 253^GLU 259^GLU 263^GLN 264^PRO

motor activity
calcium ion binding
ATP binding
actin binding
motor activity
nucleotide binding
calmodulin binding
protein binding
ATP binding
nucleotide binding
calcium ion binding
motor activity

myosin complex
myosin complex
striated muscle thick filament
cytoplasm
actin filament
stress fiber
striated muscle thin filament
cytoskeleton
cytoplasm
myofibril
myosin complex

striated muscle contraction
muscle thin filament assembly
skeletal muscle fiber development

1lp3A

[pdb]

1.72622
0.00286673

173^ARG 284^HIS 473^ASP 551^LYS 592^ARG 595^THR

0.0.0.0

structural molecule activity

virion
viral capsid

1bl9A

[pdb]

1.72824
0.00286697

158^ALA 180^ALA 182^HIS 199^ASP 372^ARG 532^LYS

1.7.2.1, 1.7.99.1

metal ion binding
oxidoreductase activity
iron ion binding
nitrite reductase (NO-forming) activity
hydroxylamine reductase activity
heme binding
electron carrier activity

oxidation reduction
electron transport chain
transport

periplasmic space

2nq5A

[pdb]

1.72913
0.00286707

395^ARG 548^THR 571^LYS 608^ASP 610^ALA 612^HIS

2.1.1.14

metal ion binding
transferase activity
zinc ion binding
methyltransferase activity
5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity

methionine biosynthetic process
cellular amino acid biosynthetic process

2dieA

[pdb]

1.72996
0.00286717

114^THR 156^LYS 161^HIS 163^ASP 204^ALA 218^ARG

0.0.0.0

carbohydrate metabolic process

cation binding
calcium ion binding
hydrolase activity
hydrolyzing O-glycosyl compounds
catalytic activity

2qa0A

[pdb]

1.73174
0.00298544

313^ARG 424^HIS 613^ASP 691^LYS 732^ARG 735^THR

0.0.0.0

structural molecule activity

viral capsid

2okkA

[pdb]

1.73192
0.00298547

255^ARG 334^ALA 349^ALA 358^LYS 362^HIS 364^ASP

4.1.1.15

cytoplasmic vesicle
Golgi membrane
synapse
cell junction
membrane
plasma membrane
Golgi apparatus
cytoplasm
perinuclear region of cytoplasm
anchored to membrane
synaptic vesicle membrane
axon
cytosol

neurotransmitter biosynthetic process
synaptic transmission
glutamate decarboxylation to succinate
carboxylic acid metabolic process

protein binding
carboxy-lyase activity
lyase activity
glutamate decarboxylase activity
pyridoxal phosphate binding

1jroD

[pdb]

1.73488
0.00298583

420^ARG 454^LYS 529^ALA 649^HIS 660^ASP 727^ALA

0.0.0.0

oxidation reduction
oxidation reduction

oxidoreductase activity
iron-sulfur cluster binding
FAD binding
metal ion binding
electron carrier activity
xanthine oxidase activity
xanthine dehydrogenase activity
catalytic activity
oxidoreductase activity
electron carrier activity
xanthine oxidase activity
xanthine dehydrogenase activity
FAD binding
molybdenum ion binding
iron ion binding
2 iron
2 sulfur cluster binding

2pwgA

[pdb]

1.73623
0.002986

65^ASP 104^HIS 143^SER 166^ARG 179^ARG 207^LYS

0.0.0.0

carbohydrate metabolic process

isomerase activity
cation binding
catalytic activity

2pgoB

[pdb]

1.73642
0.00298602

196^ARG 281^ARG 288^ALA 297^LYS 300^HIS 304^ASP

2g29A

[pdb]

1.73842
0.00310901

265^ASP 363^HIS 373^ARG 384^LYS 413^SER 416^ARG

nitrate assimilation
transport

plasma membrane
membrane

2qdsA

[pdb]

1.73997
0.00310921

121^ARG 196^HIS 224^LYS 238^ASP 241^ALA 299^ALA

3.5.2.6

metal ion binding
hydrolase activity
zinc ion binding
beta-lactamase activity

periplasmic space

response to antibiotic
antibiotic catabolic process

1ct9B

[pdb]

1.744
0.00310972

172^LYS 188^ARG 317^THR 381^HIS 384^ASP 386^ALA

6.3.5.4

cellular amino acid biosynthetic process
glutamine metabolic process
asparagine biosynthetic process
metabolic process

nucleotide binding
ATP binding
ligase activity
asparagine synthase (glutamine-hydrolyzing) activity

3c9fA

[pdb]

1.74655
0.00323518

34^ASP 81^ARG 98^SER 115^HIS 124^LYS 188^ARG

0.0.0.0

hydrolase activity

2apcA

[pdb]

1.7472
0.00323526

318^ARG 330^HIS 335^LYS 408^ASP 415^ARG 423^THR

2.4.1.101

Golgi membrane
integral to membrane
membrane
Golgi apparatus

protein amino acid N-linked glycosylation

transferase activity
transferring glycosyl groups
transferase activity
alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity

1m53A

[pdb]

1.74866
0.00323545

106^ASP 145^HIS 184^SER 207^ARG 220^ARG 248^LYS

0.0.0.0

carbohydrate metabolic process

cation binding
catalytic activity

2v7oA

[pdb]

1.75234
0.00323592

66^ARG 114^SER 126^HIS 154^LYS 263^ALA 264^ASP

2.7.11.17

calmodulin binding
ATP binding
calcium-dependent protein serine/threonine phosphatase activity
transferase activity
kinase activity
protein serine/threonine kinase activity
nucleotide binding
calmodulin-dependent protein kinase activity
protein kinase activity

cellular_component
calcium- and calmodulin-dependent protein kinase complex

insulin secretion
protein amino acid phosphorylation
protein amino acid autophosphorylation
G1/S transition of mitotic cell cycle
calcium ion transport

2pdaA

[pdb]

1.75565
0.00336398

175^ARG 435^LYS 467^HIS 485^ASP 565^THR 571^ALA

0.0.0.0

iron-sulfur cluster binding
thiamin pyrophosphate binding
oxidoreductase activity
acting on the aldehyde or oxo group of donors
oxidoreductase activity
electron carrier activity
iron ion binding
catalytic activity
metal ion binding
4 iron
4 sulfur cluster binding

metabolic process
oxidation reduction

1v34A

[pdb]

1.76642
0.0034981

73^SER 140^ASP 142^HIS 153^ARG 306^LYS 317^ARG

alpha DNA polymerase:primase complex

metal ion binding
nucleotidyltransferase activity
transferase activity
zinc ion binding
DNA-directed RNA polymerase activity
DNA primase activity

transcription
DNA replication
synthesis of RNA primer
DNA replication

2faqA

[pdb]

1.77336
0.00363694

544^ALA 566^LYS 573^HIS 578^ASP 636^ALA 776^ARG

0.0.0.0

DNA recombination
DNA repair
DNA replication
synthesis of RNA primer
DNA replication

ligase activity
ATP binding
DNA ligase (ATP) activity
DNA primase activity

2cn2A

[pdb]

1.77468
0.00378039

179^ARG 247^LYS 274^HIS 317^THR 331^ALA 414^ASP

0.0.0.0

hydrolase activity
hydrolase activity
hydrolyzing O-glycosyl compounds

polysaccharide catabolic process
carbohydrate metabolic process

2pplA

[pdb]

1.77505
0.00378044

194^ASP 256^LYS 274^ARG 281^HIS 283^ARG 347^THR

3.1.1.3

extracellular region

hydrolase activity
triacylglycerol lipase activity
catalytic activity

lipid catabolic process
lipid metabolic process

3b9tA

[pdb]

1.77613
0.0037806

319^ARG 427^ASP 430^ARG 447^ALA 470^HIS 474^LYS

0.0.0.0

hydrolase activity
acting on carbon-nitrogen (but not peptide) bonds
in linear amides

metabolic process

3mdsA

[pdb]

1.77642
0.00378065

5^LYS 43^ALA 74^ARG 80^HIS 88^ARG 152^ASP

1.15.1.1

metal ion binding
manganese ion binding
oxidoreductase activity
superoxide dismutase activity

oxidation reduction
superoxide metabolic process

1zy9A

[pdb]

1.77868
0.00378099

117^SER 166^LYS 177^ALA 380^ASP 418^HIS 484^ARG

0.0.0.0

hydrolase activity
acting on glycosyl bonds
hydrolase activity
alpha-galactosidase activity
hydrolase activity
hydrolyzing O-glycosyl compounds
catalytic activity

metabolic process
carbohydrate metabolic process

2oajA

[pdb]

1.78612
0.00393102

73^LYS 499^ARG 520^ARG 526^HIS 528^ASP 894^ALA

Rab GTPase binding
SNARE binding

establishment of cell polarity
small GTPase mediated signal transduction
Golgi to plasma membrane transport
exocytosis

plasma membrane
cytosol

1s6mA

[pdb]

1.78872
0.00393142

92^LYS 109^ALA 111^ASP 156^ARG 161^HIS 201^ALA

0.0.0.0

2nlyA

[pdb]

1.78924
0.0040863

39^ASP 61^ALA 70^THR 86^HIS 119^LYS 146^ARG

0.0.0.0

1f1aA

[pdb]

1.79001
0.00408643

8^LYS 38^SER 43^ARG 115^ARG 120^HIS 124^ASP

1.15.1.1

metal ion binding
oxidoreductase activity
antioxidant activity
zinc ion binding
copper ion binding
superoxide dismutase activity

nucleus
mitochondrial intermembrane space
cytoplasm
mitochondrion
cytosol

positive regulation of transcription factor activity
oxidation reduction
response to drug
response to cold
cellular zinc ion homeostasis
cellular copper ion homeostasis
superoxide metabolic process
age-dependent response to reactive oxygen species during chronological cell aging