The LabelHash Server
1ep0A motif
Motif residues: SER53 ARG61 HIS64 LYS73 ARG90 ASP172
Table of Top 100 matches
Click here for a compact table with the top 100 matches.The images below show the motif residues and the match residues superimposed. The carbon atoms are white in the motif and green in the match. Other atoms in the motif and match are colored by element. The C-alphas are shown as spheres, while the remaining motif and match atoms are shown in stick representation. The rest of the matching protein is shown in ribbon representation.
Downloads
- A zip file with PDB files for the top 100 matches and the motif itself.
- An XML file with all matches. You can open this file in Chimera with our ViewMatch plugin.
Top 20 matches
For each match you can click on the "[pdb]" link to download a PDB file with the matching chain aligned with the motif.1. 1epzA [pdb]
LRMSD: 0.131472617388p-value: 2.45944283961e-05
Matching residues: SER53 ARG61 HIS64 LYS73 ARG90 ASP172
EC class: 0.0.0.0
GO terms:
Molecular function: dTDP-4-dehydrorhamnose 3,5-epimerase activity
Biological process: lipopolysaccharide biosynthetic process
2. 1dztB [pdb]
LRMSD: 0.369860649109p-value: 9.24234482227e-05
Matching residues: SER52 ARG60 HIS63 LYS73 ARG90 ASP170
EC class: 5.1.3.13
GO terms:
Molecular function: isomerase activity, dTDP-4-dehydrorhamnose 3,5-epimerase activity
Biological process: lipopolysaccharide biosynthetic process
3. 2ixiB [pdb]
LRMSD: 0.421036064625p-value: 0.000116155497381
Matching residues: SER51 ARG59 HIS62 LYS71 ARG88 ASP168
EC class: 0.0.0.0
GO terms:
Molecular function: dTDP-4-dehydrorhamnose 3,5-epimerase activity
Biological process: lipopolysaccharide biosynthetic process
4. 1upiA [pdb]
LRMSD: 0.577257156372p-value: 0.000200785259949
Matching residues: SER51 ARG59 HIS62 LYS72 ARG89 ASP171
EC class: 0.0.0.0
GO terms:
Molecular function: isomerase activity, dTDP-4-dehydrorhamnose 3,5-epimerase activity
Biological process: lipopolysaccharide biosynthetic process
5. 2b9uG [pdb]
LRMSD: 0.64383918047p-value: 0.000248479103902
Matching residues: SER50 ARG58 HIS61 LYS71 ARG88 ASP163
EC class: 0.0.0.0
GO terms:
Molecular function: dTDP-4-dehydrorhamnose 3,5-epimerase activity
Biological process: lipopolysaccharide biosynthetic process
6. 1nxmB [pdb]
LRMSD: 0.713828861713p-value: 0.00030606292421
Matching residues: SER65 ARG73 HIS76 LYS82 ARG100 ASP180
EC class: 0.0.0.0
GO terms:
Molecular function: isomerase activity, dTDP-4-dehydrorhamnose 3,5-epimerase activity
Biological process: lipopolysaccharide biosynthetic process
7. 1wa4A [pdb]
LRMSD: 0.745579957962p-value: 0.000338293175446
Matching residues: SER52 ARG60 HIS63 LYS73 ARG90 ASP170
EC class: 0.0.0.0
GO terms:
Molecular function: dTDP-4-dehydrorhamnose 3,5-epimerase activity
Biological process: lipopolysaccharide biosynthetic process
8. 2c0zA [pdb]
LRMSD: 0.746442079544p-value: 0.000338298443239
Matching residues: SER51 ARG59 HIS62 LYS72 ARG89 ASP168
EC class: 0.0.0.0
GO terms:
Molecular function: dTDP-4-dehydrorhamnose 3,5-epimerase activity
Biological process: lipopolysaccharide biosynthetic process
9. 2glfB [pdb]
LRMSD: 1.32513749599p-value: 0.000535036379006
Matching residues: ALA32 LYS73 HIS94 ALA256 ARG293 ASP328
EC class: 0.0.0.0
GO terms:
Molecular function: metal ion binding, hydrolase activity, zinc ion binding, metallopeptidase activity, peptidase activity, aminopeptidase activity
Biological process: proteolysis
Cellular component: vacuole
10. 1md9A [pdb]
LRMSD: 1.32709741592p-value: 0.000535055471119
Matching residues: ARG34 ASP183 ARG202 HIS204 LYS212 THR388
EC class: GO terms:
Molecular function: ligase activity, ATP binding, nucleotide binding, (2,3-dihydroxybenzoyl)adenylate synthase activity, catalytic activity
Biological process: metabolic process, siderophore biosynthetic process
Cellular component: cytoplasm
11. 2qyvA [pdb]
LRMSD: 1.36963522434p-value: 0.000599679246079
Matching residues: LYS28 ARG49 HIS76 THR111 ALA114 ASP169
EC class: 0.0.0.0
GO terms:
Molecular function: dipeptidase activity, hydrolase activity, protein dimerization activity, metallopeptidase activity
Biological process: proteolysis
12. 1ti8A [pdb]
LRMSD: 1.37091672421p-value: 0.000599695136771
Matching residues: ARG131 HIS183 LYS193 ALA219 ARG229 ASP231
EC class: 0.0.0.0
GO terms:
Molecular function: host cell surface receptor binding, host cell surface receptor binding
Biological process: viral envelope fusion with host membrane, viral envelope fusion with host membrane
Cellular component: virion membrane, apical plasma membrane, viral envelope, virion, integral to membrane, membrane, plasma membrane, virion membrane, apical plasma membrane, viral envelope, virion, integral to membrane, membrane, plasma membrane
13. 2dkcB [pdb]
LRMSD: 1.38566529751p-value: 0.000625108659733
Matching residues: ALA287 ASP294 LYS314 ARG364 HIS391 ALA435
EC class: 5.4.2.3
GO terms:
Molecular function: metal ion binding, isomerase activity, magnesium ion binding, phosphoacetylglucosamine mutase activity, intramolecular transferase activity, phosphotransferases
Biological process: carbohydrate metabolic process
14. 1hrdB [pdb]
LRMSD: 1.46792590618p-value: 0.000805848627351
Matching residues: ARG205 ALA219 THR227 LYS248 HIS403 ASP408
EC class: 1.4.1.2
GO terms:
Molecular function: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor, oxidoreductase activity, glutamate dehydrogenase activity, binding, catalytic activity
Biological process: oxidation reduction, metabolic process, cellular amino acid metabolic process
15. 2o0vA [pdb]
LRMSD: 1.46804380417p-value: 0.000805851072073
Matching residues: ARG110 ASP161 ARG206 LYS218 HIS221 SER303
EC class: 4.2.2.2
GO terms:
Molecular function: metal ion binding, lyase activity, calcium ion binding, pectate lyase activity
Cellular component: extracellular region
16. 1v5wB [pdb]
LRMSD: 1.47698509693p-value: 0.000848229741678
Matching residues: LYS132 HIS137 ASP172 ARG192 ALA329 ALA332
EC class: GO terms:
Molecular function: ATP binding, DNA binding, nucleotide binding, nucleoside-triphosphatase activity, DNA-dependent ATPase activity, protein binding
Biological process: meiosis, cell cycle, spermatogenesis, female gamete generation, reciprocal meiotic recombination, DNA metabolic process, gamete generation, ovarian follicle development, pachytene, oocyte maturation, male meiosis I, spermatid development
Cellular component: intracellular membrane-bounded organelle, cytoplasm, nucleus, condensed nuclear chromosome, intracellular
17. 2a7vA [pdb]
LRMSD: 1.50145423412p-value: 0.000920822552871
Matching residues: THR209 ALA213 LYS264 ASP362 HIS364 ARG418
EC class: 2.1.2.1
GO terms:
Molecular function: glycine hydroxymethyltransferase activity, transferase activity, methyltransferase activity, pyridoxal phosphate binding, catalytic activity, protein binding
Biological process: one-carbon metabolic process, L-serine metabolic process, glycine metabolic process
Cellular component: mitochondrion, mitochondrial matrix, mitochondrial inner membrane, mitochondrial nucleoid
18. 2j5tD [pdb]
LRMSD: 1.53806436062p-value: 0.00106490158942
Matching residues: ALA224 LYS266 ASP322 HIS325 ARG329 ARG367
EC class: 2.7.2.11
GO terms:
Molecular function: transferase activity, kinase activity, glutamate 5-kinase activity, RNA binding, nucleotide binding, ATP binding
Biological process: cellular amino acid biosynthetic process, proline biosynthetic process
Cellular component: cytoplasm
19. 1y7pA [pdb]
LRMSD: 1.55264115334p-value: 0.00113515986595
Matching residues: LYS86 ARG110 SER168 ARG171 HIS202 ASP212
EC class: GO terms:
Molecular function: amino acid binding
Biological process: metabolic process
20. 1zwxA [pdb]
LRMSD: 1.5600322485p-value: 0.00117360649165
Matching residues: ARG68 ALA259 LYS270 ALA277 ASP282 HIS325
EC class: 3.1.4.12
GO terms:
Molecular function: hydrolase activity, sphingomyelin phosphodiesterase activity, phosphoric diester hydrolase activity
Biological process: hemolysis by symbiont of host erythrocytes, cytolysis, pathogenesis
Cellular component: extracellular region
