The LabelHash Server

1didA motif

Motif residues: PHE25 HIS53 ASP56 PHE93 TRP136 LYS182

Table of Top 100 matches

Click here for a compact table with the top 100 matches.

The images below show the motif residues and the match residues superimposed. The carbon atoms are white in the motif and green in the match. Other atoms in the motif and match are colored by element. The C-alphas are shown as spheres, while the remaining motif and match atoms are shown in stick representation. The rest of the matching protein is shown in ribbon representation.

Downloads

A zip file with PDB files for the top 100 matches and the motif itself.
An XML file with all matches. You can open this file in Chimera with our ViewMatch plugin.

Top 20 matches

For each match you can click on the "[pdb]" link to download a PDB file with the matching chain aligned with the motif.

1. 1dieA [pdb]

LRMSD: 0.110968537629
p-value: 0.000110277193016
Matching residues: PHE25 HIS53 ASP56 PHE93 TRP136 LYS182
EC class: 5.3.1.5
GO terms:
Molecular function: metal ion binding, isomerase activity, magnesium ion binding, xylose isomerase activity
Biological process: D-xylose metabolic process, pentose-phosphate shunt, carbohydrate metabolic process
Cellular component: cytoplasm

2. 1xylA [pdb]

LRMSD: 0.167472273111
p-value: 0.000162331416504
Matching residues: PHE25 HIS53 ASP56 PHE93 TRP136 LYS182
EC class: 5.3.1.5
GO terms:
Molecular function: metal ion binding, isomerase activity, magnesium ion binding, xylose isomerase activity
Biological process: D-xylose metabolic process, pentose-phosphate shunt, carbohydrate metabolic process
Cellular component: cytoplasm

3. 1qt1A [pdb]

LRMSD: 0.168031334877
p-value: 0.000162335971254
Matching residues: PHE25 HIS53 ASP56 PHE93 TRP136 LYS182
EC class: 5.3.1.5
GO terms:
Molecular function: cobalt ion binding, metal ion binding, isomerase activity, xylose isomerase activity, magnesium ion binding
Biological process: D-xylose metabolic process, pentose-phosphate shunt, carbohydrate metabolic process
Cellular component: cytoplasm

4. 5ximD [pdb]

LRMSD: 0.192196592689
p-value: 0.000195666434593
Matching residues: PHE26 HIS54 ASP57 PHE94 TRP137 LYS183
EC class: 5.3.1.5
GO terms:
Molecular function: metal ion binding, isomerase activity, magnesium ion binding, xylose isomerase activity
Biological process: D-xylose metabolic process, pentose-phosphate shunt, carbohydrate metabolic process
Cellular component: cytoplasm

5. 3cwhA [pdb]

LRMSD: 0.284944057465
p-value: 0.00030041282298
Matching residues: PHE26 HIS54 ASP57 PHE94 TRP137 LYS183
EC class: 5.3.1.5
GO terms:
Molecular function: metal ion binding, isomerase activity, magnesium ion binding, xylose isomerase activity
Biological process: D-xylose metabolic process, pentose-phosphate shunt, carbohydrate metabolic process
Cellular component: cytoplasm

6. 1bxbA [pdb]

LRMSD: 0.304503202438
p-value: 0.000325359287672
Matching residues: PHE25 HIS53 ASP56 PHE93 TRP136 LYS182
EC class: 5.3.1.5
GO terms:
Molecular function: metal ion binding, isomerase activity, magnesium ion binding, xylose isomerase activity
Biological process: D-xylose metabolic process, pentose-phosphate shunt, carbohydrate metabolic process
Cellular component: cytoplasm

7. 1bxcD [pdb]

LRMSD: 0.309035509825
p-value: 0.000325396074913
Matching residues: PHE25 HIS53 ASP56 PHE93 TRP136 LYS182
EC class: 5.3.1.5
GO terms:
Molecular function: metal ion binding, isomerase activity, magnesium ion binding, xylose isomerase activity
Biological process: D-xylose metabolic process, pentose-phosphate shunt, carbohydrate metabolic process
Cellular component: cytoplasm

8. 1a0cA [pdb]

LRMSD: 0.547587096691
p-value: 0.000518658373039
Matching residues: PHE59 HIS100 ASP103 PHE144 TRP187 LYS233
EC class: 5.3.1.5
GO terms:
Molecular function: cobalt ion binding, metal ion binding, isomerase activity, xylose isomerase activity, magnesium ion binding
Biological process: D-xylose metabolic process, pentose-phosphate shunt, carbohydrate metabolic process
Cellular component: cytoplasm

9. 1a0eA [pdb]

LRMSD: 0.645132362843
p-value: 0.000576323422138
Matching residues: PHE59 HIS100 ASP103 PHE144 TRP187 LYS233
EC class: 5.3.1.5
GO terms:
Molecular function: xylose isomerase activity, magnesium ion binding, cobalt ion binding, metal ion binding, isomerase activity
Biological process: carbohydrate metabolic process, D-xylose metabolic process, pentose-phosphate shunt
Cellular component: cytoplasm

10. 1a0dD [pdb]

LRMSD: 0.677858650684
p-value: 0.000592700729612
Matching residues: PHE58 HIS98 ASP101 PHE142 TRP185 LYS231
EC class: 5.3.1.5
GO terms:
Molecular function: metal ion binding, manganese ion binding, isomerase activity, xylose isomerase activity, magnesium ion binding
Biological process: D-xylose metabolic process, pentose-phosphate shunt, carbohydrate metabolic process
Cellular component: cytoplasm

11. 2i56D [pdb]

LRMSD: 1.28234088421
p-value: 0.000708760693669
Matching residues: PHE66 HIS101 ASP105 PHE131 TRP179 LYS221
EC class: 0.0.0.0
GO terms:
Molecular function: isomerase activity

12. 2gthA [pdb]

LRMSD: 1.54074549675
p-value: 0.000810529629234
Matching residues: PHE43 HIS66 TRP81 PHE94 LYS100 ASP155
EC class: 2.7.7.48
GO terms:
Molecular function: metal ion binding, hydrolase activity, nucleotidyltransferase activity, transferase activity, zinc ion binding, cysteine-type peptidase activity, peptidase activity, ATP binding, exonuclease activity, endonuclease activity, nuclease activity, helicase activity, RNA-directed RNA polymerase activity, RNA binding, nucleotide binding, exoribonuclease activity, producing 5'-phosphomonoesters, methyltransferase activity, cysteine-type endopeptidase activity, catalytic activity, metal ion binding, hydrolase activity, zinc ion binding, cysteine-type peptidase activity, peptidase activity, RNA binding, RNA-directed RNA polymerase activity, catalytic activity
Biological process: transcription, RNA-dependent, viral protein processing, viral genome replication, viral reproduction, proteolysis, transcription, viral protein processing, viral genome replication, viral reproduction, proteolysis
Cellular component: integral to membrane, membrane, cytoplasm, viral replication complex, integral to membrane, membrane, cytoplasm, viral replication complex, perinuclear region of cytoplasm, perinuclear region of cytoplasm

13. 1olpA [pdb]

LRMSD: 1.62167811394
p-value: 0.000892376818229
Matching residues: TRP1 ASP71 PHE128 HIS136 LYS159 PHE175
EC class: 0.0.0.0
GO terms:
Molecular function: phospholipase C activity, hydrolase activity, acting on ester bonds, zinc ion binding

14. 3b6rB [pdb]

LRMSD: 1.69076251984
p-value: 0.00100562057924
Matching residues: PHE194 TRP218 LYS223 ASP233 HIS234 PHE334
EC class: 2.7.3.2
GO terms:
Molecular function: transferase activity, kinase activity, ATP binding, nucleotide binding, creatine kinase activity, transferase activity, transferring phosphorus-containing groups, catalytic activity, protein binding
Biological process: creatine metabolic process, cellular chloride ion homeostasis, brain development
Cellular component: cytoplasm, cytosol, mitochondrion

15. 1khoA [pdb]

LRMSD: 1.77879059315
p-value: 0.00126314908266
Matching residues: TRP1 ASP71 PHE128 HIS136 LYS159 PHE175
EC class: 3.1.4.3
GO terms:
Molecular function: metal ion binding, hydrolase activity, zinc ion binding, calcium ion binding, phosphatidylcholine phospholipase C activity, hydrolase activity, acting on ester bonds, phospholipase C activity
Biological process: hemolysis by symbiont of host erythrocytes, cytolysis, pathogenesis
Cellular component: extracellular region

16. 2bkqD [pdb]

LRMSD: 1.79295134544
p-value: 0.0013200645335
Matching residues: ASP29 HIS30 PHE36 PHE116 LYS198 TRP202
EC class: GO terms:
Molecular function: hydrolase activity, cysteine-type peptidase activity, peptidase activity, protein binding
Biological process: ubiquitin-dependent protein catabolic process, proteolysis, modification-dependent protein catabolic process

17. 1i0eB [pdb]

LRMSD: 1.80207288265
p-value: 0.00135063251946
Matching residues: PHE194 TRP218 LYS223 ASP233 HIS234 PHE334
EC class: 2.7.3.2
GO terms:
Molecular function: transferase activity, kinase activity, ATP binding, nucleotide binding, creatine kinase activity, transferase activity, transferring phosphorus-containing groups, catalytic activity
Biological process: creatine metabolic process, phosphocreatine biosynthetic process
Cellular component: cytoplasm, cytosol

18. 1lxmA [pdb]

LRMSD: 1.81042039394
p-value: 0.00138258491643
Matching residues: ASP631 HIS649 LYS703 PHE752 TRP755 PHE843
EC class: 4.2.2.1
GO terms:
Molecular function: lyase activity, hyaluronate lyase activity, carbohydrate binding, carbon-oxygen lyase activity, acting on polysaccharides, catalytic activity
Biological process: carbohydrate metabolic process
Cellular component: extracellular region

19. 1p7bB [pdb]

LRMSD: 1.84403800964
p-value: 0.00156182516366
Matching residues: PHE158 HIS161 LYS191 PHE222 TRP274 ASP305
EC class: 0.0.0.0
GO terms:
Molecular function: ion channel activity, inward rectifier potassium channel activity
Biological process: potassium ion transport
Cellular component: membrane

20. 1dboA [pdb]

LRMSD: 1.85294938087
p-value: 0.00160124036483
Matching residues: PHE83 ASP201 HIS202 PHE204 TRP467 LYS476
EC class: 4.2.2.19
GO terms:
Molecular function: lyase activity, chondroitin B lyase activity