The LabelHash Server
1czfA motif
Motif residues: ASN178 ASP180 ASP201 ARG256 LYS258 TYR291
Table of Top 100 matches
Click here for a compact table with the top 100 matches.The images below show the motif residues and the match residues superimposed. The carbon atoms are white in the motif and green in the match. Other atoms in the motif and match are colored by element. The C-alphas are shown as spheres, while the remaining motif and match atoms are shown in stick representation. The rest of the matching protein is shown in ribbon representation.
Downloads
- A zip file with PDB files for the top 100 matches and the motif itself.
- An XML file with all matches. You can open this file in Chimera with our ViewMatch plugin.
Top 20 matches
For each match you can click on the "[pdb]" link to download a PDB file with the matching chain aligned with the motif.1. 1czfA [pdb]
LRMSD: 0.0p-value: 2.47973785008e-05
Matching residues: ASN178 ASP180 ASP201 ARG256 LYS258 TYR291
EC class: 3.2.1.15
GO terms:
Molecular function: hydrolase activity, acting on glycosyl bonds, hydrolase activity, polygalacturonase activity
Biological process: metabolic process, cell wall organization, carbohydrate metabolic process
Cellular component: extracellular region
2. 2iq7C [pdb]
LRMSD: 0.255392581224p-value: 0.000100460929389
Matching residues: ASN176 ASP178 ASP199 ARG254 LYS256 TYR289
EC class: 0.0.0.0
GO terms:
Molecular function: hydrolase activity, acting on glycosyl bonds, hydrolase activity, polygalacturonase activity
Biological process: metabolic process, cell wall organization, carbohydrate metabolic process
3. 1nhcF [pdb]
LRMSD: 0.273977488279p-value: 0.000106635692646
Matching residues: ASN184 ASP186 ASP207 ARG262 LYS264 TYR297
EC class: 3.2.1.15
GO terms:
Molecular function: hydrolase activity, acting on glycosyl bonds, hydrolase activity, polygalacturonase activity
Biological process: metabolic process, cell wall organization, carbohydrate metabolic process
Cellular component: extracellular region
4. 1hg8A [pdb]
LRMSD: 0.488638192415p-value: 0.00019914994482
Matching residues: ASN189 ASP191 ASP212 ARG267 LYS269 TYR302
EC class: 3.2.1.15
GO terms:
Molecular function: hydrolase activity, acting on glycosyl bonds, hydrolase activity, polygalacturonase activity
Biological process: metabolic process, cell wall organization, carbohydrate metabolic process
Cellular component: extracellular region
5. 1ib4B [pdb]
LRMSD: 0.538463890553p-value: 0.000219561115955
Matching residues: ASN157 ASP159 ASP180 ARG235 LYS237 TYR270
EC class: 3.2.1.15
GO terms:
Molecular function: hydrolase activity, acting on glycosyl bonds, hydrolase activity, polygalacturonase activity
Biological process: metabolic process, cell wall organization, carbohydrate metabolic process
Cellular component: extracellular region
6. 1kcdA [pdb]
LRMSD: 0.681293010712p-value: 0.000278991967207
Matching residues: ASN151 ASP153 ASP173 ARG226 LYS228 TYR262
EC class: 0.0.0.0
GO terms:
Molecular function: hydrolase activity, acting on glycosyl bonds, hydrolase activity, polygalacturonase activity
Biological process: metabolic process, cell wall organization, carbohydrate metabolic process
7. 1bheA [pdb]
LRMSD: 1.02332007885p-value: 0.000342173414538
Matching residues: ASN200 ASP202 ASP223 ARG280 LYS282 TYR314
EC class: 3.2.1.15
GO terms:
Molecular function: hydrolase activity, hydrolase activity, acting on glycosyl bonds, polygalacturonase activity
Biological process: metabolic process, cell wall organization, carbohydrate metabolic process
Cellular component: extracellular region
8. 1xbfB [pdb]
LRMSD: 1.37068200111p-value: 0.000425148202339
Matching residues: TYR7 ASN13 ASP14 ASP15 HIS44 LYS126
EC class: 0.0.0.0
GO terms:
9. 1vmhA [pdb]
LRMSD: 1.43710267544p-value: 0.000471686857054
Matching residues: TYR7 ASN13 ASP14 ASP15 HIS44 LYS126
EC class: 0.0.0.0
GO terms:
10. 2uvfB [pdb]
LRMSD: 1.49938189983p-value: 0.000553497695364
Matching residues: ASN379 ASP381 ASP402 ARG466 LYS468 TYR501
EC class: 0.0.0.0
GO terms:
Molecular function: polygalacturonase activity
Biological process: carbohydrate metabolic process
11. 1d5rA [pdb]
LRMSD: 1.53219735622p-value: 0.000602257205173
Matching residues: ASN49 ASP51 ASP52 HIS61 LYS66 TYR68
EC class: 3.1.3.48, 3.1.3.67, 3.1.3.16
GO terms:
Molecular function: protein tyrosine/serine/threonine phosphatase activity, phosphatidylinositol-3-phosphatase activity, protein serine/threonine phosphatase activity, phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity, phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity, PDZ domain binding, magnesium ion binding, protein binding, platelet-derived growth factor receptor binding, inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity, protein tyrosine phosphatase activity, hydrolase activity, lipid binding, phosphoprotein phosphatase activity
Biological process: apoptosis, endothelial cell migration, neuron projection development, angiogenesis, regulation of cyclin-dependent protein kinase activity, negative regulation of cell cycle, cell cycle, negative regulation of protein kinase B signaling cascade, negative regulation of focal adhesion formation, phosphoinositide dephosphorylation, inositol phosphate dephosphorylation, regulation of protein stability, negative regulation of cell migration, negative regulation of cell proliferation, protein amino acid dephosphorylation, cardiac muscle tissue development, platelet-derived growth factor receptor signaling pathway, negative regulation of apoptosis, cell migration, central nervous system development, induction of apoptosis, heart development, cell proliferation, lipid metabolic process
Cellular component: cytosol, nucleus, cytoplasm
12. 2gafD [pdb]
LRMSD: 1.56435751915p-value: 0.000662204169203
Matching residues: LYS233 TYR240 ASP245 ASP248 ASN249 HIS467
EC class: 2.7.7.19
GO terms:
Molecular function: transferase activity, methyltransferase activity, mRNA (nucleoside-2'-O-)-methyltransferase activity, transferase activity, polynucleotide adenylyltransferase activity, nucleotide binding, ATP binding
Biological process: mRNA processing, mRNA capping, transcription, regulation of mRNA 3'-end processing, viral transcription, mRNA processing, transcription
13. 4ptdA [pdb]
LRMSD: 1.58164215088p-value: 0.000714316964149
Matching residues: LYS116 TYR118 ARG163 ASP180 ASN181 ASP198
EC class: 4.6.1.13
GO terms:
Molecular function: lyase activity, phosphatidylinositol diacylglycerol-lyase activity, phosphoric diester hydrolase activity, phospholipase C activity
Biological process: lipid catabolic process, intracellular signaling cascade, lipid metabolic process
Cellular component: extracellular region
14. 1kaeB [pdb]
LRMSD: 1.63243734837p-value: 0.000866667367518
Matching residues: ASP38 ASP41 ASN42 TYR130 LYS218 ARG219
EC class: 1.1.1.23
GO terms:
Molecular function: metal ion binding, oxidoreductase activity, zinc ion binding, histidinol dehydrogenase activity, NAD or NADH binding
Biological process: oxidation reduction, cellular amino acid biosynthetic process, histidine biosynthetic process, metabolic process
15. 1ouuD [pdb]
LRMSD: 1.64029479027p-value: 0.000892241194379
Matching residues: TYR85 LYS86 ASP99 ASP101 ASN102 ARG144
EC class: GO terms:
Molecular function: metal ion binding, iron ion binding, oxygen transporter activity, heme binding, oxygen binding, metal ion binding, iron ion binding, oxygen transporter activity, heme binding, oxygen binding
Biological process: oxygen transport, transport, oxygen transport, transport
Cellular component: hemoglobin complex, hemoglobin complex
16. 1nikA [pdb]
LRMSD: 1.65072762966p-value: 0.000918490521144
Matching residues: LYS368 HIS399 ASP438 ASN439 ASP440 TYR465
EC class: 2.7.7.6
GO terms:
Molecular function: ribonucleoside binding, metal ion binding, zinc ion binding, DNA-directed RNA polymerase activity, DNA binding, metal ion binding, nucleotidyltransferase activity, transferase activity, zinc ion binding, DNA-directed RNA polymerase activity, DNA binding, magnesium ion binding, protein binding, protein binding, protein binding, protein binding, protein binding, metal ion binding, zinc ion binding, DNA-directed RNA polymerase activity, DNA binding, protein binding, metal ion binding, zinc ion binding, DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding, metal ion binding, zinc ion binding, DNA-directed RNA polymerase activity, transcription regulator activity, DNA binding, nucleic acid binding, protein binding, DNA-directed RNA polymerase activity, DNA binding, protein binding, DNA-directed RNA polymerase activity, DNA binding, metal ion binding, nucleotidyltransferase activity, transferase activity, zinc ion binding, DNA-directed RNA polymerase activity, magnesium ion binding, DNA binding, DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding, DNA-directed RNA polymerase activity, protein binding
Biological process: transcription from RNA polymerase II promoter, transcription, transcription, transcription from RNA polymerase II promoter, RNA elongation from RNA polymerase II promoter, transcription, transcription from RNA polymerase II promoter, regulation of transcription, transcription, transcription from RNA polymerase II promoter, response to DNA damage stimulus, transcription, DNA repair, response to drug, transcription from RNA polymerase II promoter, transcription-coupled nucleotide-excision repair, regulation of transcription, transcription, transcription from RNA polymerase II promoter, transcription, transcription from RNA polymerase II promoter, transcription, DNA-dependent, transcription, transcription from RNA polymerase II promoter, transcription, transcription from RNA polymerase II promoter, transcription, transcription from RNA polymerase II promoter
Cellular component: DNA-directed RNA polymerase III complex, nucleus, DNA-directed RNA polymerase I complex, DNA-directed RNA polymerase III complex, DNA-directed RNA polymerase II, core complex, nucleoplasm, nucleus, mitochondrion, DNA-directed RNA polymerase II, core complex, nucleolus, nucleolus, nucleus, DNA-directed RNA polymerase I complex, DNA-directed RNA polymerase II, core complex, nucleoplasm, nucleus, DNA-directed RNA polymerase II, core complex, nucleoplasm, nucleus, DNA-directed RNA polymerase II, core complex, nucleus, DNA-directed RNA polymerase I complex, DNA-directed RNA polymerase III complex, DNA-directed RNA polymerase II, core complex, nucleoplasm, cytoplasm, nucleus, DNA-directed RNA polymerase I complex, DNA-directed RNA polymerase III complex, DNA-directed RNA polymerase II, core complex, nucleoplasm, RNA polymerase complex, nucleus, mitochondrion, DNA-directed RNA polymerase II, core complex, nucleus, DNA-directed RNA polymerase II, core complex, nucleus, DNA-directed RNA polymerase I complex, DNA-directed RNA polymerase III complex, DNA-directed RNA polymerase II, core complex, nucleoplasm
17. 2oxaA [pdb]
LRMSD: 1.66092729568p-value: 0.000945962849073
Matching residues: ASP79 ASN145 ASP148 ARG179 TYR212 LYS214
EC class: 0.0.0.0
GO terms:
Molecular function: peptidase activity, serine-type endopeptidase activity, serine-type peptidase activity, hydrolase activity
Biological process: proteolysis
18. 1cm8A [pdb]
LRMSD: 1.66693150997p-value: 0.000974586117081
Matching residues: TYR135 LYS139 ARG142 ASP153 ASN158 ASP171
EC class: 2.7.11.24
GO terms:
Molecular function: magnesium ion binding, protein binding, protein serine/threonine kinase activity, metal ion binding, transferase activity, kinase activity, ATP binding, nucleotide binding, MAP kinase activity, protein kinase activity
Biological process: cell cycle arrest, myoblast differentiation, cell cycle, Ras protein signal transduction, intracellular signaling cascade, muscle organ development, signal transduction, DNA damage induced protein phosphorylation, protein amino acid phosphorylation
Cellular component: mitochondrion, cytoplasm
19. 2j63B [pdb]
LRMSD: 1.69786167145p-value: 0.0011029294692
Matching residues: LYS169 TYR200 ARG204 ASP335 ASN337 ASP411
EC class: 0.0.0.0
GO terms:
Molecular function: lyase activity, endonuclease activity, DNA-(apurinic or apyrimidinic site) lyase activity, nuclease activity, DNA binding
Biological process: DNA repair
Cellular component: intracellular
20. 1lp4A [pdb]
LRMSD: 1.72470116615p-value: 0.00125269894488
Matching residues: TYR138 LYS142 HIS148 ASP156 ASN161 ASP175
EC class: 2.7.11.1
GO terms:
Molecular function: transferase activity, kinase activity, ATP binding, protein serine/threonine kinase activity, nucleotide binding, protein kinase activity
Biological process: protein amino acid phosphorylation
