The LabelHash Server
1b7yA motif
Motif residues: TRP149 HIS178 SER180 GLU206 GLN218 PHE258 PHE260
Table of Top 100 matches
Click here for a compact table with the top 100 matches.The images below show the motif residues and the match residues superimposed. The carbon atoms are white in the motif and green in the match. Other atoms in the motif and match are colored by element. The C-alphas are shown as spheres, while the remaining motif and match atoms are shown in stick representation. The rest of the matching protein is shown in ribbon representation.
Downloads
- A zip file with PDB files for the top 100 matches and the motif itself.
- An XML file with all matches. You can open this file in Chimera with our ViewMatch plugin.
Top 20 matches
For each match you can click on the "[pdb]" link to download a PDB file with the matching chain aligned with the motif.1. 1pysA [pdb]
LRMSD: 0.399894803762p-value: 2.30312853091e-05
Matching residues: TRP149 HIS178 SER180 GLU206 GLN218 PHE258 PHE260
EC class: 6.1.1.20
GO terms:
Molecular function: metal ion binding, ligase activity, ATP binding, aminoacyl-tRNA ligase activity, RNA binding, magnesium ion binding, nucleotide binding, tRNA binding, phenylalanine-tRNA ligase activity, metal ion binding, ligase activity, ATP binding, aminoacyl-tRNA ligase activity, magnesium ion binding, nucleotide binding, phenylalanine-tRNA ligase activity
Biological process: translation, tRNA processing, phenylalanyl-tRNA aminoacylation, translation, phenylalanyl-tRNA aminoacylation, tRNA aminoacylation for protein translation
Cellular component: cytoplasm, cytoplasm
2. 1lm5B [pdb]
LRMSD: 1.34261035919p-value: 8.7551328761e-05
Matching residues: PHE2729 GLY2735 GLU2749 GLN2762 GLN2765 THR2767 TYR2785
EC class: GO terms:
Molecular function: protein binding, bridging, structural molecule activity, structural constituent of cytoskeleton, protein binding
Biological process: keratinocyte differentiation, peptide cross-linking, epidermis development
Cellular component: cornified envelope, cell junction, cytoskeleton, cytoplasm, mitochondrion, basolateral plasma membrane, desmosome
3. 1ua8A [pdb]
LRMSD: 1.38372600079p-value: 0.000113394773507
Matching residues: HIS17 SER19 ARG43 ALA94 PHE140 TYR152 GLN158
EC class: GO terms:
Molecular function: protein binding, protein transporter activity
Biological process: protein transport, transport
Cellular component: periplasmic space, outer membrane-bounded periplasmic space
4. 3bfrA [pdb]
LRMSD: 1.47247159481p-value: 0.000209678633837
Matching residues: TYR42 THR48 GLN52 GLN54 ARG70 ALA74 PHE81
EC class: 1.15.1.1
GO terms:
Molecular function: metal ion binding, manganese ion binding, oxidoreductase activity, superoxide dismutase activity, protein binding
Biological process: oxidation reduction, oxygen and reactive oxygen species metabolic process, age-dependent response to oxidative stress during chronological cell aging, age-dependent response to reactive oxygen species during chronological cell aging, replicative cell aging, superoxide metabolic process
Cellular component: mitochondrial matrix, mitochondrion
5. 1w6jA [pdb]
LRMSD: 1.52166640759p-value: 0.000317052064929
Matching residues: GLU146 GLN646 GLN648 THR652 ALA693 ASN709 PHE711
EC class: 5.4.99.7
GO terms:
Molecular function: isomerase activity, lanosterol synthase activity, intramolecular transferase activity, catalytic activity
Biological process: lipid biosynthetic process, steroid biosynthetic process, steroid metabolic process, cholesterol biosynthetic process
6. 1xfdD [pdb]
LRMSD: 1.53875815868p-value: 0.000382187979994
Matching residues: ARG191 GLN212 ALA245 ASN260 TYR285 SER289 HIS301
EC class: GO terms:
Molecular function: dipeptidyl-peptidase activity, serine-type peptidase activity
Biological process: cell death, proteolysis
Cellular component: membrane, integral to membrane
7. 1xkwA [pdb]
LRMSD: 1.54016184807p-value: 0.000382223399356
Matching residues: GLN148 ASP206 GLY244 GLN263 THR302 PHE306 TYR325
EC class: GO terms:
Molecular function: iron ion binding, receptor activity, siderophore-iron transmembrane transporter activity, transporter activity
Biological process: iron ion transport, ion transport, transport, siderophore transport
Cellular component: cell outer membrane, membrane, plasma membrane
8. 1e6yD [pdb]
LRMSD: 1.55486881733p-value: 0.000434814079199
Matching residues: GLU4319 GLN4345 SER4419 GLN4420 PHE4466 ASN4501 GLY4507
EC class: 2.8.4.1
GO terms:
Molecular function: transferase activity, coenzyme-B sulfoethylthiotransferase activity, metal ion binding, transferase activity, nickel ion binding, coenzyme-B sulfoethylthiotransferase activity, transferase activity, coenzyme-B sulfoethylthiotransferase activity
Biological process: methanogenesis, methanogenesis, methanogenesis
9. 1el9A [pdb]
LRMSD: 1.59221589565p-value: 0.000646348693408
Matching residues: HIS53 GLY56 GLU60 GLN69 SER144 PHE244 TYR254
EC class: 1.5.3.1
GO terms:
Molecular function: oxidoreductase activity, sarcosine oxidase activity
Biological process: oxidation reduction, tetrahydrofolate metabolic process
Cellular component: cytoplasm
10. 2qf9B [pdb]
LRMSD: 1.59634411335p-value: 0.000646529020742
Matching residues: ALA57 ARG88 TYR149 TYR150 THR155 HIS158 GLN188
EC class: 0.0.0.0
GO terms:
11. 2rhqA [pdb]
LRMSD: 1.6033949852p-value: 0.000690238666721
Matching residues: ALA154 HIS172 SER174 ARG201 GLN214 PHE254 PHE256
EC class: 6.1.1.20
GO terms:
Molecular function: metal ion binding, ligase activity, ATP binding, aminoacyl-tRNA ligase activity, RNA binding, magnesium ion binding, nucleotide binding, tRNA binding, phenylalanine-tRNA ligase activity, metal ion binding, ligase activity, ATP binding, aminoacyl-tRNA ligase activity, magnesium ion binding, nucleotide binding, phenylalanine-tRNA ligase activity
Biological process: translation, tRNA processing, phenylalanyl-tRNA aminoacylation, translation, phenylalanyl-tRNA aminoacylation, tRNA aminoacylation for protein translation
Cellular component: cytoplasm, cytoplasm
12. 2fh1B [pdb]
LRMSD: 1.60783338547p-value: 0.000736303860322
Matching residues: PHE441 SER446 GLN467 GLN473 GLY502 TYR520 ASP665
EC class: GO terms:
Molecular function: calcium ion binding, actin binding, protein binding
Biological process: actin filament capping, actin filament polymerization, actin filament severing, barbed-end actin filament capping, vesicle-mediated transport
Cellular component: extracellular region, cytosol, cytoskeleton, cytoplasm, actin cytoskeleton, lamellipodium
13. 1nphA [pdb]
LRMSD: 1.62063395977p-value: 0.000832415185869
Matching residues: PHE441 SER446 GLN467 GLN473 GLY502 TYR520 ASP665
EC class: GO terms:
Molecular function: calcium ion binding, actin binding, protein binding
Biological process: actin filament capping, actin filament polymerization, actin filament severing, barbed-end actin filament capping, vesicle-mediated transport
Cellular component: cytosol, extracellular region, cytoskeleton, cytoplasm, lamellipodium
14. 1zovB [pdb]
LRMSD: 1.62067127228p-value: 0.000832417106722
Matching residues: HIS53 GLY56 GLU60 GLN69 SER144 PHE244 TYR254
EC class: 1.5.3.1
GO terms:
Molecular function: oxidoreductase activity, sarcosine oxidase activity
Biological process: oxidation reduction, tetrahydrofolate metabolic process
Cellular component: cytoplasm
15. 1vkpB [pdb]
LRMSD: 1.6222140789p-value: 0.000832496152725
Matching residues: THR25 PHE57 ARG102 ASN318 GLN369 GLN371 ALA373
EC class: 3.5.3.12
GO terms:
Molecular function: agmatine deiminase activity, hydrolase activity
Biological process: polyamine biosynthetic process, putrescine biosynthetic process
16. 1skbA [pdb]
LRMSD: 1.62400341034p-value: 0.000832587887999
Matching residues: GLN16 SER22 HIS23 TYR28 GLU37 TRP376 PHE380
EC class: 3.1.3.8
GO terms:
Molecular function: hydrolase activity, 3-phytase activity, acid phosphatase activity
Cellular component: extracellular region
17. 1xv2A [pdb]
LRMSD: 1.62744224072p-value: 0.000883689324837
Matching residues: HIS8 THR10 ALA23 GLU30 GLN207 ASN213 PHE216
EC class: 0.0.0.0
GO terms:
Molecular function: acetolactate decarboxylase activity
Biological process: polyol metabolic process
Cellular component: endoplasmic reticulum membrane
18. 3cvgB [pdb]
LRMSD: 1.63037037849p-value: 0.000883847067598
Matching residues: GLN49 TYR169 ASN175 THR203 GLN207 ALA212 ARG234
EC class: 0.0.0.0
GO terms:
19. 2g5gX [pdb]
LRMSD: 1.63128209114p-value: 0.000937397475354
Matching residues: GLY45 SER56 GLN57 GLU80 GLN122 TYR247 TYR261
EC class: 0.0.0.0
GO terms:
20. 1hm2A [pdb]
LRMSD: 1.63440418243p-value: 0.000937573960982
Matching residues: GLN224 GLN230 SER232 TYR267 TYR268 GLY346 ARG366
EC class: 4.2.2.5
GO terms:
Molecular function: metal ion binding, lyase activity, calcium ion binding, chondroitin AC lyase activity, carbohydrate binding, carbon-oxygen lyase activity, acting on polysaccharides, catalytic activity
Biological process: carbohydrate metabolic process
Cellular component: extracellular region
