The LabelHash Server
1adyA motif
Motif residues: GLU81 THR83 ARG112 GLU130 TYR264 ARG311
Table of Top 100 matches
Click here for a compact table with the top 100 matches.The images below show the motif residues and the match residues superimposed. The carbon atoms are white in the motif and green in the match. Other atoms in the motif and match are colored by element. The C-alphas are shown as spheres, while the remaining motif and match atoms are shown in stick representation. The rest of the matching protein is shown in ribbon representation.
Downloads
- A zip file with PDB files for the top 100 matches and the motif itself.
- An XML file with all matches. You can open this file in Chimera with our ViewMatch plugin.
Top 20 matches
For each match you can click on the "[pdb]" link to download a PDB file with the matching chain aligned with the motif.1. 1adjB [pdb]
LRMSD: 0.135873571038p-value: 2.23026308959e-05
Matching residues: GLU81 THR83 ARG112 GLU130 TYR264 ARG311
EC class: 6.1.1.21
GO terms:
Molecular function: ligase activity, ATP binding, aminoacyl-tRNA ligase activity, nucleotide binding, histidine-tRNA ligase activity
Biological process: translation, histidyl-tRNA aminoacylation, tRNA aminoacylation for protein translation
Cellular component: cytoplasm
2. 1httD [pdb]
LRMSD: 0.361492425203p-value: 6.85666382196e-05
Matching residues: GLU83 THR85 ARG113 GLU131 TYR264 ARG311
EC class: 6.1.1.21
GO terms:
Molecular function: ATP binding, histidine-tRNA ligase activity, ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ligase activity, ATP binding, aminoacyl-tRNA ligase activity, nucleotide binding, histidine-tRNA ligase activity, ligase activity, ATP binding, aminoacyl-tRNA ligase activity, nucleotide binding, histidine-tRNA ligase activity
Biological process: histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation, translation, histidyl-tRNA aminoacylation, tRNA aminoacylation for protein translation, translation, histidyl-tRNA aminoacylation, tRNA aminoacylation for protein translation
Cellular component: cytoplasm, cytoplasm, cytoplasm
3. 2q09A [pdb]
LRMSD: 0.898836672306p-value: 0.000135665133712
Matching residues: ARG38 GLN57 GLU133 THR136 LEU165 ASP374
EC class: GO terms:
Molecular function: metal ion binding, hydrolase activity, zinc ion binding, iron ion binding, imidazolonepropionase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
Biological process: histidine metabolic process, histidine catabolic process to glutamate and formamide, histidine catabolic process
Cellular component: cytoplasm
4. 2oogB [pdb]
LRMSD: 0.906773030758p-value: 0.000144909252413
Matching residues: ARG60 ASP89 ARG159 THR170 GLU180 LEU225
EC class: GO terms:
Molecular function: glycerophosphodiester phosphodiesterase activity, phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity, phosphoric diester hydrolase activity
Biological process: lipid metabolic process, glycerol metabolic process, lipid metabolic process, glycerol metabolic process
5. 2pt3A [pdb]
LRMSD: 1.03429329395p-value: 0.000300749059534
Matching residues: LEU269 ARG360 ASP393 ASP555 THR557 ASN570
EC class: 1.11.1.7
GO terms:
Molecular function: metal ion binding, oxidoreductase activity, calcium ion binding, iron ion binding, peroxidase activity, heme binding
Biological process: oxidation reduction, hydrogen peroxide catabolic process, defense response to bacterium, response to oxidative stress
Cellular component: extracellular region, extracellular space
6. 3db9A [pdb]
LRMSD: 1.05143201351p-value: 0.000339960504789
Matching residues: ARG24 ASP72 THR77 LEU80 ASP85 ARG94
EC class: GO terms:
7. 2yvdD [pdb]
LRMSD: 1.06481575966p-value: 0.000388370361179
Matching residues: ARG67 SER145 ASP162 THR188 TYR341 GLU402
EC class: GO terms:
Molecular function: metal ion binding, hydrolase activity, zinc ion binding, endonuclease activity, nuclease activity, RNA binding
Biological process: rRNA processing
Cellular component: cytoplasm
8. 1wf4e [pdb]
LRMSD: 1.06975114346p-value: 0.000416410941398
Matching residues: ARG36 GLU76 THR81 ASP87 SER151 LEU506
EC class: 0.0.0.0
GO terms:
Molecular function: ATP binding, ATP binding, nucleotide binding, protein binding, unfolded protein binding
Biological process: protein folding, protein folding, cellular protein metabolic process, protein refolding
Cellular component: cytoplasm, cytoplasm
9. 2zyqA [pdb]
LRMSD: 1.08526468277p-value: 0.000481240131194
Matching residues: TYR8 THR138 GLU140 GLU219 ASN249 SER254
EC class: 0.0.0.0
GO terms:
Molecular function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, oxidoreductase activity, biphenyl-2,3-diol 1,2-dioxygenase activity, ferrous iron binding, catalytic activity, iron ion binding
Biological process: oxidation reduction, cellular aromatic compound metabolic process, aromatic compound catabolic process
10. 1yz6A [pdb]
LRMSD: 1.09143090248p-value: 0.000518180604558
Matching residues: ARG201 ASP211 ARG225 ASP227 THR229 TYR234
EC class: GO terms:
Molecular function: translation initiation factor activity, RNA binding
Biological process: translation, translational initiation
Cellular component: eukaryotic translation initiation factor 2 complex
11. 3d8bA [pdb]
LRMSD: 1.10162186623p-value: 0.000558520143386
Matching residues: SER464 ASP500 GLN527 THR545 GLU550 LEU563
EC class: GO terms:
Molecular function: hydrolase activity, magnesium ion binding, metal ion binding, ATP binding, nucleotide binding, nucleoside-triphosphatase activity
Biological process: ATP metabolic process
12. 3f0eA [pdb]
LRMSD: 1.11598110199p-value: 0.000649115943816
Matching residues: ARG80 ASP97 THR99 LEU107 ARG128 GLU149
EC class: 4.6.1.12
GO terms:
Molecular function: metal ion binding, lyase activity, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
Biological process: isoprenoid biosynthetic process, terpenoid biosynthetic process
13. 1uzgB [pdb]
LRMSD: 1.11678147316p-value: 0.00064915639814
Matching residues: GLN120 GLU126 THR198 ASP201 SER220 LEU262
EC class: 3.4.21.91, 2.7.7.48, 2.1.1.56
GO terms:
Molecular function: hydrolase activity, nucleotidyltransferase activity, transferase activity, ATP binding, structural molecule activity, helicase activity, RNA-directed RNA polymerase activity, nucleotide binding, mRNA (guanine-N7-)-methyltransferase activity, ATP-dependent helicase activity, serine-type endopeptidase activity, catalytic activity, double-stranded RNA binding, RNA helicase activity, RNA binding, nucleic acid binding, methyltransferase activity
Biological process: transcription, RNA-dependent, viral genome replication, viral infectious cycle, RNA metabolic process, viral reproduction, methylation
Cellular component: membrane, viral envelope, viral capsid, viral nucleocapsid, virion, integral to membrane, virion part
14. 1dbiA [pdb]
LRMSD: 1.12610960007p-value: 0.000751806539483
Matching residues: GLU34 GLU83 THR97 ARG103 SER126 LEU235
EC class: GO terms:
Molecular function: metal ion binding, hydrolase activity, serine-type peptidase activity, peptidase activity, calcium ion binding, serine-type endopeptidase activity
Biological process: proteolysis
Cellular component: extracellular region
15. 2pifA [pdb]
LRMSD: 1.12611985207p-value: 0.000751807063352
Matching residues: ARG23 ASP71 THR76 LEU79 ASP84 ARG93
EC class: GO terms:
16. 1qe0A [pdb]
LRMSD: 1.13561320305p-value: 0.000806134950835
Matching residues: GLU80 THR82 ARG112 GLU130 TYR262 ARG312
EC class: 6.1.1.21
GO terms:
Molecular function: ligase activity, ATP binding, aminoacyl-tRNA ligase activity, nucleotide binding, histidine-tRNA ligase activity
Biological process: translation, histidyl-tRNA aminoacylation, tRNA aminoacylation for protein translation
Cellular component: cytoplasm
17. 4pgaB [pdb]
LRMSD: 1.15275025368p-value: 0.000925807922613
Matching residues: GLU68 LEU75 THR102 GLU104 ASN139 SER167
EC class: 3.5.1.38
GO terms:
Molecular function: hydrolase activity, glutamin-(asparagin-)ase activity, asparaginase activity
Biological process: asparagine metabolic process, cellular amino acid metabolic process
Cellular component: periplasmic space
18. 2v4wA [pdb]
LRMSD: 1.15584552288p-value: 0.000990867032669
Matching residues: TYR273 THR291 ASP294 ASP319 LYS369 SER405
EC class: 2.3.3.10
GO terms:
Molecular function: transferase activity, hydroxymethylglutaryl-CoA synthase activity, catalytic activity
Biological process: sterol biosynthetic process, lipid biosynthetic process, cholesterol biosynthetic process, steroid biosynthetic process, isoprenoid biosynthetic process, metabolic process, response to peptide hormone stimulus, response to drug, response to nutrient
Cellular component: mitochondrion, mitochondrial matrix, mitochondrial inner membrane
19. 2jd4B [pdb]
LRMSD: 1.15912139416p-value: 0.000991093111224
Matching residues: ARG2721 LEU2758 GLU2788 THR2797 ASP2799 GLN2855
EC class: GO terms:
Molecular function: protein binding, extracellular matrix structural constituent, receptor binding
Biological process: cell adhesion, establishment of epithelial cell apical/basal polarity, tissue development, cell surface receptor linked signal transduction, morphogenesis of an epithelial sheet, regulation of embryonic development, regulation of cell migration, regulation of cell adhesion, branching involved in lung morphogenesis, branching involved in salivary gland morphogenesis
Cellular component: basement membrane, proteinaceous extracellular matrix, extracellular region, basal lamina, extracellular matrix, laminin-1 complex
20. 3pga4 [pdb]
LRMSD: 1.16236257553p-value: 0.00105983659159
Matching residues: GLU68 LEU75 THR102 GLU104 ASN139 SER167
EC class: 3.5.1.38
GO terms:
Molecular function: hydrolase activity, glutamin-(asparagin-)ase activity, asparaginase activity
Biological process: asparagine metabolic process, cellular amino acid metabolic process
Cellular component: periplasmic space
